LINC00536 Gene

Name long intergenic non-protein coding RNA 536
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have uncovered an emerging oncogenic role for the long non‐coding RNA LINC00536 in various cancer types. In bladder cancer, LINC00536 is highly expressed in tumor tissues compared with normal controls, and its upregulation is associated with a lower survival rate. Functional experiments demonstrated that overexpression of LINC00536 promotes cell proliferation, migration, and invasion, at least in part by activating the Wnt3a/β‑catenin signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In hepatocellular carcinoma, LINC00536 is also overexpressed in tumor samples and correlates with poor prognosis. Mechanistically, LINC00536 acts as a competing endogenous RNA by binding to miR‑203b‑5p, thereby decreasing miR‑203b‑5p levels and, in turn, allowing upregulation of its target gene VEGFA, which promotes malignant progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, a chromosomal translocation disrupting LINC00536 has been identified in a patient with clinical features overlapping with Trichorhinophalangeal syndrome, suggesting that alterations in the genomic architecture involving LINC00536 may affect the cis‑regulation of neighboring genes such as TRPS1, contributing to disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In breast cancer, bioinformatics‐based ceRNA network analyses have incorporated LINC00536 as a component of multi‑lncRNA prognostic signatures. Its differential expression is significantly associated with overall survival, reinforcing the notion that LINC00536 may serve as an independent prognostic biomarker and participate in oncogenic regulatory networks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings indicate that LINC00536 contributes to tumor progression through multiple mechanisms—ranging from activation of key signaling pathways to modulation of microRNA regulatory networks—and underscore its potential as both a prognostic marker and a therapeutic target in cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ran Li, Lei Zhang, Zhiqiang Qin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High LINC00536 expression promotes tumor progression and poor prognosis in bladder cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Cell Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexcr.2019.03.009"}], "href": "https://doi.org/10.1016/j.yexcr.2019.03.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30851243"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30851243"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Li-Gang Wang, Hai-Yang Song, Kun-Peng Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00536 promotes hepatocellular carcinoma progression via the miR-203b-5p/VEGFA axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neoplasma (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4149/neo_2021_210815N1158"}], "href": "https://doi.org/10.4149/neo_2021_210815N1158"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34881629"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34881629"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Milena Crippa, Ilaria Bestetti, Mario Perotti, et al. "}, {"type": "b", "children": [{"type": "t", "text": "New case of trichorinophalangeal syndrome-like phenotype with a de novo t(2;8)(p16.1;q23.3) translocation which does not disrupt the TRPS1 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Med Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2350-15-52"}], "href": "https://doi.org/10.1186/1471-2350-15-52"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24886451"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24886451"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chun-Ni Fan, Lei Ma, Ning Liu "}, {"type": "b", "children": [{"type": "t", "text": "Systematic analysis of lncRNA-miRNA-mRNA competing endogenous RNA network identifies four-lncRNA signature as a prognostic biomarker for breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-018-1640-2"}], "href": "https://doi.org/10.1186/s12967-018-1640-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30261893"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30261893"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jing-Jing Wang, Yue-Qing Huang, Wei Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of the lncRNA‑associated competing endogenous RNA network in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2019.7374"}], "href": "https://doi.org/10.3892/or.2019.7374"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31638237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31638237"}]}]}]}
NCBI Gene ID 100859921
API
Download Associations
Predicted Functions View LINC00536's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00536's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00536's ARCHS4 Predicted Functions.

Functional Associations

LINC00536 has 279 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LINC00536 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00536 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00536 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00536 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00536 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00536 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00536 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00536 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00536 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00536 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00536 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.