| Name | long intergenic non-protein coding RNA 538 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent evidence has demonstrated that the long non‐coding RNA LINC00538 functions as an oncogenic regulator in colon cancer. In colon cancer tissues, LINC00538 is significantly overexpressed relative to matched normal tissues and its high expression correlates with poorer overall survival. Functional assays in colon cancer cell lines (e.g., HCT116 and RKO) have shown that silencing LINC00538 attenuates cell proliferation, shortens the S phase of the cell cycle, and induces apoptosis. Mechanistic studies further revealed that LINC00538 exerts its tumor‐promoting effects by binding to the epigenetic regulator EZH2, which in turn leads to the suppression of NKD2 expression—a change that appears to facilitate unchecked cell proliferation and survival. These findings highlight the potential of LINC00538 as both a prognostic biomarker and a therapeutic target in colon cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hanqing Tang, Yuyu Dou, Yiliang Meng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00538 promotes the progression of colon cancer through inhibiting NKD2 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J BUON (2020)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33455110"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33455110"}]}]}]}
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| Synonyms | YIYA, PROX1UT |
| NCBI Gene ID | 100861504 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00538 has 158 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.
Click the + buttons to view associations for LINC00538 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00538 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00538 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00538 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00538 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |