| Name | long intergenic non-protein coding RNA 539 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although the query focuses on LINC00539, none of the provided abstracts describe its function. Instead, abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "details how the long noncoding RNA (lncRNA) MEG3 regulates gene expression by associating with chromatin. In that study, MEG3 was shown to target distal regulatory elements of TGF‐β pathway genes through RNA–DNA triplex formation, suggesting that such a mechanism might be common among chromatin‐interacting lncRNAs. Abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "was provided without additional context regarding lncRNA function, and abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "describes a genome‐wide association study identifying genetic risk loci for MRI‐defined brain infarcts, highlighting high blood pressure as a significant modifiable risk factor.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, while these studies underline important regulatory roles of lncRNAs—as exemplified by MEG3’s modulation of chromatin and gene expression—and delineate genetic factors involved in cerebrovascular pathology, there is no direct evidence provided herein regarding the function of LINC00539. Further research is needed to elucidate whether LINC00539 shares similar regulatory mechanisms or contributes uniquely to disease processes.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tanmoy Mondal, Santhilal Subhash, Roshan Vaid, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms8743"}], "href": "https://doi.org/10.1038/ncomms8743"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26205790"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26205790"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xueqiu Jian, Myriam Fornage "}, {"type": "b", "children": [{"type": "t", "text": "Imaging Endophenotypes of Stroke as a Target for Genetic Studies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stroke (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/STROKEAHA.117.017073"}], "href": "https://doi.org/10.1161/STROKEAHA.117.017073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29760278"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29760278"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ganesh Chauhan, Hieab H H Adams, Claudia L Satizabal, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based setting."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurology (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1212/WNL.0000000000006851"}], "href": "https://doi.org/10.1212/WNL.0000000000006851"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30651383"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30651383"}]}]}]}
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| Synonyms | LINC00422 |
| NCBI Gene ID | 100652865 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00539 has 204 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 2 datasets.
Click the + buttons to view associations for LINC00539 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00539 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00539 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |