LINC00540 Gene

Name long intergenic non-protein coding RNA 540
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent genome‐wide association studies have identified LINC00540, a long intergenic noncoding RNA located at 13q12.11, as a novel risk locus for abdominal aortic aneurysm (AAA)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although none of the provided studies detail its molecular function, its emergence in these large‐scale genetic analyses suggests that LINC00540 may play a regulatory role in vascular biology. In light of the fact that its association appears specific to AAA—without clear links to other common cardiovascular or metabolic traits—LINC00540 is postulated to be involved in the vascular remodeling, inflammatory responses, or extracellular matrix dynamics that characterize aneurysm formation and progression. Future functional studies will be critical to elucidate the specific mechanisms by which LINC00540 contributes to AAA pathogenesis and to assess its potential utility as a biomarker or therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Weihong Tang, Athanasios Saratzis, Jack Pattee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Replication of Newly Identified Genetic Associations Between Abdominal Aortic Aneurysm and SMYD2, LINC00540, PCIF1/MMP9/ZNF335, and ERG."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Vasc Endovasc Surg (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejvs.2019.02.017"}], "href": "https://doi.org/10.1016/j.ejvs.2019.02.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31680049"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31680049"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Gregory T Jones, Gerard Tromp, Helena Kuivaniemi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCRESAHA.116.308765"}], "href": "https://doi.org/10.1161/CIRCRESAHA.116.308765"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27899403"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27899403"}]}]}]}
NCBI Gene ID 100506622
API
Download Associations
Predicted Functions View LINC00540's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00540's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00540's ARCHS4 Predicted Functions.

Functional Associations

LINC00540 has 254 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for LINC00540 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00540 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00540 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00540 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00540 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00540 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00540 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.