LINC00544 Gene

Name long intergenic non-protein coding RNA 544
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent transcriptomic analyses have revealed that long non‐coding RNAs, including LINC00544, play critical regulatory roles in diverse biological settings. In one study investigating the transcriptional landscape during early lymphoid commitment in human bone marrow and thymus, LINC00544—along with thousands of other lncRNAs—displayed highly stage‐ and lineage‐specific expression patterns. Such expression profiles suggest that LINC00544 may be involved in regulating gene networks essential for lymphoid differentiation and the establishment of early developmental relationships among progenitor cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a separate investigation focusing on glioblastoma prognostication, LINC00544 was identified as part of a panel of lncRNAs whose differential expression distinguishes patient outcomes. Its inclusion in the prognostic signature implies that dysregulation of LINC00544 may be linked to key signaling pathways—including those related to calcium signaling, neuroactive ligand‐receptor interactions, and Wnt signaling—thereby potentially influencing tumor progression and patient survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies underscore a dual role for LINC00544 in both normal immune development and glioblastoma, marking it as a candidate for further investigation as a regulator of lymphoid differentiation as well as a prognostic biomarker in cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "David Casero, Salemiz Sandoval, Christopher S Seet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA profiling of human lymphoid progenitor cells reveals transcriptional divergence of B cell and T cell lineages."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Immunol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ni.3299"}], "href": "https://doi.org/10.1038/ni.3299"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26502406"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26502406"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhenyu Gong, Fan Hong, Hongxiang Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An eight-mRNA signature outperforms the lncRNA-based signature in predicting prognosis of patients with glioblastoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Med Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12881-020-0992-7"}], "href": "https://doi.org/10.1186/s12881-020-0992-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32188434"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32188434"}]}]}]}
NCBI Gene ID 440131
API
Download Associations
Predicted Functions View LINC00544's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00544's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00544's ARCHS4 Predicted Functions.

Functional Associations

LINC00544 has 194 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for LINC00544 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00544 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00544 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with LINC00544 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00544 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00544 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00544 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00544 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00544 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00544 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00544 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00544 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.