| Name | long intergenic non-protein coding RNA 547 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Among the studies provided, only one directly evaluated long non‐coding RNAs (lncRNAs) in a tumor context and identified LINC00547 as part of a six‐lncRNA signature with prognostic significance in esophageal squamous cell carcinoma (ESCC)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although the study did not dissect the molecular mechanism of LINC00547, its inclusion in this robust prognostic panel suggests that it may contribute to tumor progression, influence patient survival, or serve as a valuable biomarker when combined with established clinicopathological factors. In contrast, the other two abstracts focused on identifying genomic alterations and risk factors across various disorders—basal cell carcinoma and breast cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "as well as subclinical atherosclerosis in individuals with type 2 diabetes"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "—thereby highlighting how diverse genomic features, including lncRNAs, might be harnessed to improve disease classification and prognostication. Collectively, these studies underscore the emerging interest in non‐coding RNAs such as LINC00547 and advocate for further investigation into their functional roles in cancer progression and their potential utility as auxiliary prognostic biomarkers.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ze-Jun Zheng, Yan-Shang Li, Jun-De Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction of the Six-lncRNA Prognosis Signature as a Novel Biomarker in Esophageal Squamous Cell Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2022.839589"}], "href": "https://doi.org/10.3389/fgene.2022.839589"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35432441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35432441"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Alessandra Morelle, Rodrigo Cericatto, Ana Cristina Victorino Krepischi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Clinical and genetic characterization of basal cell carcinoma and breast cancer in a single patient."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Springerplus (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/2193-1801-3-454"}], "href": "https://doi.org/10.1186/2193-1801-3-454"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25184114"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25184114"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yingchang Lu, Latchezar Dimitrov, Shyh-Huei Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Multiethnic Genome-Wide Association Study of Subclinical Atherosclerosis in Individuals With Type 2 Diabetes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Genom Precis Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCGEN.120.003258"}], "href": "https://doi.org/10.1161/CIRCGEN.120.003258"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34241534"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34241534"}]}]}]}
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| NCBI Gene ID | 400121 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00547 has 181 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for LINC00547 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00547 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00547 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with LINC00547 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with LINC00547 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00547 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00547 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |