| Name | long intergenic non-protein coding RNA 557 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLeucine‐rich repeat kinase 1 (LRRK1) is a multifunctional regulator of cellular homeostasis with crucial roles in the central nervous system. In the aging brain, LRRK1, in collaboration with its homolog LRRK2, is essential for the survival of dopaminergic neurons, with its loss leading to age‐dependent neurodegeneration that is associated with increased apoptosis and accumulation of autophagic vacuoles. LRRK1 is further implicated in the regulation of autophagic flux, where it is recruited to autolysosomes to modulate Rab7 activity—effectively switching off Rab7 signaling—and phosphorylates Rab7A at Ser72, thereby fine‐tuning endosomal trafficking and degradation pathways."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the skeletal system, LRRK1 plays a critical role in osteoclast function and bone remodeling. Disruption of LRRK1 leads to severe osteopetrosis, which is attributed to defective osteoclast cytoskeletal organization and reduced bone resorption. Mechanistic studies reveal that LRRK1 governs signaling cascades involving c‐Src and the small GTPases RAC1/Cdc42, and modulates actin assembly through targets such as L‑plastin, ensuring the formation of functional resorptive structures."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in autophagy and skeletal remodeling, LRRK1 is integral to immune cell signaling and epithelial function. In B cells, LRRK1 enhances B‑cell receptor–mediated NF‑κB activation, thereby promoting the expression of genes vital for cell proliferation, survival, and class‐switch recombination during humoral immune responses. Concurrently, LRRK1 interacts with factor inhibiting hypoxia‑inducible factor 1 (FIH‑1) to modulate epidermal growth factor receptor (EGFR) trafficking and signaling, a process that underpins keratinocyte migration and effective wound healing."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Emilie Giaime, Youren Tong, Lisa K Wagner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Age-Dependent Dopaminergic Neurodegeneration and Impairment of the Autophagy-Lysosomal Pathway in LRRK-Deficient Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2017.09.036"}], "href": "https://doi.org/10.1016/j.neuron.2017.09.036"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29056298"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29056298"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Toshihiko Toyofuku, Keiko Morimoto, Shigemi Sasawatari, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Leucine-Rich Repeat Kinase 1 Regulates Autophagy through Turning On TBC1D2-Dependent Rab7 Inactivation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00085-15"}], "href": "https://doi.org/10.1128/MCB.00085-15"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26100023"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26100023"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Asad U Malik, Athanasios Karapetsas, Raja S Nirujogi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deciphering the LRRK code: LRRK1 and LRRK2 phosphorylate distinct Rab proteins and are regulated by diverse mechanisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BCJ20200937"}], "href": "https://doi.org/10.1042/BCJ20200937"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33459343"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33459343"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Weirong Xing, Jeff Liu, Shaohong Cheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Targeted disruption of leucine-rich repeat kinase 1 but not leucine-rich repeat kinase 2 in mice causes severe osteopetrosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Bone Miner Res (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jbmr.1935"}], "href": "https://doi.org/10.1002/jbmr.1935"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23526378"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23526378"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Canjun Zeng, Helen Goodluck, Xuezhong Qin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Leucine-rich repeat kinase-1 regulates osteoclast function by modulating RAC1/Cdc42 Small GTPase phosphorylation and activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Endocrinol Metab (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpendo.00189.2016"}], "href": "https://doi.org/10.1152/ajpendo.00189.2016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27600824"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27600824"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mingjue Si, Helen Goodluck, Canjun Zeng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LRRK1 regulation of actin assembly in osteoclasts involves serine 5 phosphorylation of L-plastin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.27377"}], "href": "https://doi.org/10.1002/jcb.27377"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30136304"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30136304"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Keiko Morimoto, Yoshihiro Baba, Hisaaki Shinohara, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LRRK1 is critical in the regulation of B-cell responses and CARMA1-dependent NF-κB activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep25738"}], "href": "https://doi.org/10.1038/srep25738"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27166870"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27166870"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Han Peng, Nihal Kaplan, Wending Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FIH-1 disrupts an LRRK1/EGFR complex to positively regulate keratinocyte migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Pathol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajpath.2014.08.014"}], "href": "https://doi.org/10.1016/j.ajpath.2014.08.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25455687"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25455687"}]}]}]}
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| NCBI Gene ID | 100861544 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00557 has 11 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.
Click the + buttons to view associations for LINC00557 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00557 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00557 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00557 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00557 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |