| Name | long intergenic non-protein coding RNA 559 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe seminal vesicle secretion protein I (SVS I) is a major protein in mouse seminal vesicle secretions that plays an important role in male reproductive physiology. SVS I is initially synthesized as an 820–amino acid precursor containing a 24–residue signal peptide and is processed into a mature glycoprotein of approximately 91 kDa. Although the protein is homologous to amiloride-binding protein 1 and diamine oxidases, a key substitution at the active site (His for Tyr) suggests that SVS I has lost classical oxidase enzymatic activity. Instead, conserved histidine residues imply a role in copper binding, which may contribute to the protein’s structural or regulatory functions. Its gene structure, with five exons, and conserved genomic region in rodents highlight its evolutionary importance despite divergence from primate lineages."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSVS I expression is highly specific to the seminal vesicle, where its localization to the luminal epithelium of mucosal folds is indicative of a secretory and structural function. The mRNA levels are androgen-dependent and increase with sexual maturation, emphasizing its reproductive role. Functionally, SVS I is a target for type 4 transglutaminase (TG4), which mediates the covalent incorporation of substrates into the protein. Detailed fragment analyses of SVS I revealed that a central region (residues 79–259) undergoes efficient cross-linking at glutamine residues Q232 and Q254, suggesting that TG4-catalyzed crosslinking of SVS I is pivotal for the formation or stabilization of the seminal coagulum essential for sperm viability and fertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ake Lundwall, Johan Malm, Adam Clauss, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular cloning of complementary DNA encoding mouse seminal vesicle-secreted protein SVS I and demonstration of homology with copper amine oxidases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.103.019984"}], "href": "https://doi.org/10.1095/biolreprod.103.019984"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12930721"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12930721"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Huan-Chin Tseng, Han-Jia Lin, Jyh-Bing Tang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of the major TG4 cross-linking sites in the androgen-dependent SVS I exclusively expressed in mouse seminal vesicle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.22190"}], "href": "https://doi.org/10.1002/jcb.22190"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19452452"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19452452"}]}]}]}
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| NCBI Gene ID | 100874187 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00559 has 176 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for LINC00559 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00559 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00559 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00559 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00559 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00559 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00559 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00559 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00559 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |