LINC00561 Gene

Name long intergenic non-protein coding RNA 561
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have demonstrated that pannexin channels – notably those formed by Panx1 and Panx2 – are integral to mediating intercellular communication and contributing to pathological processes such as ischemic brain injury. In experimental models of cerebral ischemia, dual Panx1/Panx2 knockout mice exhibit reduced neuronal channel function and impaired dye release, which correlates with decreased infarct sizes and improved sensorimotor outcomes. These observations indicate that while some glial and inflammatory responses (e.g., IL‑1β release and astrocytic hemichannel function) remain unaffected by loss of these channels, their neuronal expression contributes markedly to brain damage under ischemic conditions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nDevelopmental expression analyses have revealed that pannexins are widely distributed throughout the nervous system, yet their expression is both spatially and temporally regulated. For instance, Panx1 is robustly expressed in the embryonic brain and declines in adulthood, whereas Panx2 displays an opposite pattern with increased postnatal expression. These proteins are found in diverse neuronal populations including retinal ganglion cells, cochlear supporting cells, olfactory neurons, and even in non‐neuronal structures of the lens. Such distribution patterns suggest critical roles in establishing and maintaining neural circuitry as well as in sensory processing."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the molecular level, pannexins are subject to complex regulation – including glycosylation, post‐translational modifications, and protein–protein interactions – which collectively influence their cellular trafficking and channel function. The formation of heteromeric complexes (for example, between Panx1 and Panx2 or Panx3) is glycosylation‑dependent and affects their plasma membrane targeting. In neural progenitor cells, distinct post‑translational modifications of Panx2 regulate the timing of neuronal differentiation, while in peripheral tissues such as pancreatic β‑cells and epidermal keratinocytes, pannexins modulate apoptotic responses under pro‑inflammatory or stress conditions. These multifaceted roles underscore the diverse contribution of pannexins in both normal tissue homeostasis and in response to cellular injury."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Panagiotis Bargiotas, Antje Krenz, Sheriar G Hormuzdi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pannexins in ischemia-induced neurodegeneration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1018262108"}], "href": "https://doi.org/10.1073/pnas.1018262108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22147915"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22147915"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Panagiotis Bargiotas, Antje Krenz, Hannah Monyer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional outcome of pannexin-deficient mice after cerebral ischemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Channels (Austin) (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/chan.22315"}], "href": "https://doi.org/10.4161/chan.22315"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23111424"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23111424"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Angelika Vogt, Sheriar G Hormuzdi, Hannah Monyer "}, {"type": "b", "children": [{"type": "t", "text": "Pannexin1 and Pannexin2 expression in the developing and mature rat brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Res Mol Brain Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molbrainres.2005.08.002"}], "href": "https://doi.org/10.1016/j.molbrainres.2005.08.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16143426"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16143426"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Galina Dvoriantchikova, Dmitry Ivanov, Yuri Panchin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of pannexin family of proteins in the retina."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.febslet.2006.03.026"}], "href": "https://doi.org/10.1016/j.febslet.2006.03.026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16616526"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16616526"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Galina Dvoriantchikova, Dmitry Ivanov, Anna Pestova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular characterization of pannexins in the lens."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2006)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17149368"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17149368"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Wenxue Tang, Shoeb Ahmad, Valery I Shestopalov, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pannexins are new molecular candidates for assembling gap junctions in the cochlea."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroreport (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/WNR.0b013e32830891f5"}], "href": "https://doi.org/10.1097/WNR.0b013e32830891f5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18695503"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18695503"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xiao-Hui Wang, Michele Streeter, Ying-Peng Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and characterization of pannexin expression in the mammalian cochlea."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Comp Neurol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cne.21898"}], "href": "https://doi.org/10.1002/cne.21898"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19009624"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19009624"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Honghong Zhang, Youting Chen, Chunbo Zhang "}, {"type": "b", "children": [{"type": "t", "text": "Patterns of heterogeneous expression of pannexin 1 and pannexin 2 transcripts in the olfactory epithelium and olfactory bulb."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Histol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10735-012-9443-x"}], "href": "https://doi.org/10.1007/s10735-012-9443-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22945868"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22945868"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Silvia Penuela, Ruchi Bhalla, Kakon Nag, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Glycosylation regulates pannexin intermixing and cellular localization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e09-01-0067"}], "href": "https://doi.org/10.1091/mbc.e09-01-0067"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19692571"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19692571"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Leigh Anne Swayne, Catherine D Sorbara, Steffany A L Bennett "}, {"type": "b", "children": [{"type": "t", "text": "Pannexin 2 is expressed by postnatal hippocampal neural progenitors and modulates neuronal commitment."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.130054"}], "href": "https://doi.org/10.1074/jbc.M110.130054"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20529862"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20529862"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Leigh E Wicki-Stordeur, Andrew K J Boyce, Leigh Anne Swayne "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of a pannexin 2-pannexin 1 chimeric protein supports divergent roles for pannexin C-termini in cellular localization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Commun Adhes (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3109/15419061.2013.791681"}], "href": "https://doi.org/10.3109/15419061.2013.791681"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23659289"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23659289"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Lukas A Berchtold, Michela Miani, Thi A Diep, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pannexin-2-deficiency sensitizes pancreatic β-cells to cytokine-induced apoptosis in vitro and impairs glucose tolerance in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Endocrinol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mce.2017.04.001"}], "href": "https://doi.org/10.1016/j.mce.2017.04.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28390953"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28390953"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Rafael E Sanchez-Pupo, Brooke L O'Donnell, Danielle Johnston, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pannexin 2 is expressed in murine skin and promotes UVB-induced apoptosis of keratinocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.E21-08-0387"}], "href": "https://doi.org/10.1091/mbc.E21-08-0387"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34985913"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34985913"}]}]}]}
NCBI Gene ID 100861545
API
Download Associations
Predicted Functions View LINC00561's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00561's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00561's ARCHS4 Predicted Functions.

Functional Associations

LINC00561 has 4 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, chemical, cell line, cell type or tissue) extracted from 3 datasets.

Click the + buttons to view associations for LINC00561 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00561 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00561 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00561 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.