LINC00565 Gene

Name long intergenic non-protein coding RNA 565
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00565 is a long non‐coding RNA that has emerged as a multifaceted oncogenic regulator across several cancer types. In glioblastoma, for example, LINC00565 is part of a prognostic six‐lncRNA signature that is associated with key pathways—such as focal adhesion, extracellular matrix receptor interaction, and MAPK signaling—suggesting its potential role in tumor progression and patient risk stratification."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In ovarian cancer, LINC00565 is markedly upregulated and correlates with unfavorable clinical features. Functional studies have shown that its high expression promotes cell proliferation, invasion, and migration by facilitating cell cycle progression through upregulation of CyclinD1, CyclinE1, and CDK4 while suppressing cell cycle inhibitors such as P16 and P21. Moreover, LINC00565 has been implicated in the upregulation of the oncogene GAS6, thereby aiding tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In endometrial carcinoma, elevated levels of LINC00565 correlate with larger tumor size, advanced pathological stage, and poor prognosis. Mechanistic investigations revealed that it enhances cellular proliferation by downregulating the transcription factor KLF9, with knockdown studies demonstrating marked inhibition of proliferative capacity and tumor growth in vivo."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In gastric cancer, LINC00565 functions as a competing endogenous RNA by sponging miR‐665, which leads to an increase in AKT3 expression. This molecular interaction contributes to enhanced proliferative and colony formation abilities while reducing apoptosis, thereby facilitating tumor development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Similarly, in colorectal cancer, the upregulation of LINC00565 is associated with advanced tumor stage and larger tumor size. Here, LINC00565 predominantly localizes in the cytoplasm and binds to EZH2, a key epigenetic regulator, thereby promoting cell proliferation and migration. Rescue experiments further underscore its role in aggravating tumor aggressiveness."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies underscore the oncogenic role of LINC00565—it exerts its effects through diverse molecular mechanisms, including modulation of cell cycle regulators, acting as a competitive endogenous RNA, and interacting with epigenetic modifiers. Its consistent upregulation in various cancers and clear associations with poor prognostic features make LINC00565 a promising biomarker for cancer diagnosis and a potential target for personalized therapeutic strategies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ruqing Liang, Yaqin Zhi, Guizhi Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of long non-coding RNAs in glioblastoma for prognosis prediction using weighted gene co-expression network analysis, Cox regression, and L1-LASSO penalization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S171957"}], "href": "https://doi.org/10.2147/OTT.S171957"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30613154"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30613154"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mi Gong, Chengyan Luo, Huangyang Meng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulated LINC00565 Accelerates Ovarian Cancer Progression By Targeting GAS6."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S227758"}], "href": "https://doi.org/10.2147/OTT.S227758"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31819497"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31819497"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Na Li, Xianquan Zhan "}, {"type": "b", "children": [{"type": "t", "text": "Anti-parasite drug ivermectin can suppress ovarian cancer by regulating lncRNA-EIF4A3-mRNA axes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EPMA J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13167-020-00209-y"}], "href": "https://doi.org/10.1007/s13167-020-00209-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32549918"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32549918"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiuyan Yin, Xiaohong Li, Guijiao Feng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00565 Enhances Proliferative Ability in Endometrial Carcinoma by Downregulating KLF9."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S249133"}], "href": "https://doi.org/10.2147/OTT.S249133"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32636642"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32636642"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Unknown Authors "}, {"type": "b", "children": [{"type": "t", "text": "Erratum: Upregulated LINC00565 Accelerates Ovarian Cancer Progression by Targeting GAS6 [Corrigendum]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S242712"}], "href": "https://doi.org/10.2147/OTT.S242712"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32099390"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32099390"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jianghong Hu, Guohua Ni, Ling Mao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00565 promotes proliferation and inhibits apoptosis of gastric cancer by targeting miR-665/AKT3 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S189471"}], "href": "https://doi.org/10.2147/OTT.S189471"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31576144"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31576144"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xiaxia Shao, Tao Zhao, Lei Xi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00565 promotes the progression of colorectal cancer by upregulating EZH2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2020.12314"}], "href": "https://doi.org/10.3892/ol.2020.12314"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33281964"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33281964"}]}]}]}
NCBI Gene ID 100861555
API
Download Associations
Predicted Functions View LINC00565's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00565's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00565's ARCHS4 Predicted Functions.

Functional Associations

LINC00565 has 655 functional associations with biological entities spanning 4 categories (organism, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for LINC00565 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00565 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00565 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00565 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00565 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00565 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00565 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00565 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00565 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00565 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00565 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00565 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00565 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.