| HGNC Family | Non-coding RNAs |
| Name | long intergenic non-protein coding RNA 570 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNAs (lncRNAs) have emerged as versatile regulators of gene expression, with roles that include enhancer‐like activation of neighboring genes, modulation of long‐range chromatin interactions, and contributions to the regulatory networks that underpin development and disease."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " Although many lncRNAs, through their distinct sequence motifs and chromatin contacts, are implicated in the activation of key developmental regulators and transcriptional fine‐tuning (see, for example"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "and"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ", a recent study profiling lncRNA expression in rheumatoid arthritis (RA) synovial tissues identified a specific subset with altered levels.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In particular, lncRNA LINC00570 was found to be significantly downregulated in both synovial tissues and synovial fluid from RA patients, in contrast to other lncRNAs that were upregulated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " This reduction suggests that LINC00570 may normally participate in maintaining joint homeostasis or modulating inflammatory responses, and its decreased expression could contribute to the pathogenesis of RA. Although the precise molecular mechanisms of LINC00570 remain to be elucidated, its differential expression in RA highlights its potential as a biomarker and a functional mediator in the inflammatory milieu.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, the findings underscore the complexity of lncRNA-mediated regulatory networks and position LINC00570 as a candidate for further study to better understand its role in transcriptional regulation and inflammatory disease.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ulf Andersson Ørom, Thomas Derrien, Malte Beringer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNAs with enhancer-like function in human cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2010.09.001"}], "href": "https://doi.org/10.1016/j.cell.2010.09.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20887892"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20887892"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Liuyang Cai, Huidan Chang, Yaping Fang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep36572"}], "href": "https://doi.org/10.1038/srep36572"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27824113"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27824113"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jessime M Kirk, Susan O Kim, Kaoru Inoue, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional classification of long non-coding RNAs by k-mer content."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41588-018-0207-8"}], "href": "https://doi.org/10.1038/s41588-018-0207-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30224646"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30224646"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Donghang Cheng, Vidyasiri Vemulapalli, Yue Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CARM1 methylates MED12 to regulate its RNA-binding ability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci Alliance (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26508/lsa.201800117"}], "href": "https://doi.org/10.26508/lsa.201800117"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30456381"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30456381"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Florencio Pazos, Adrian Garcia-Moreno, Juan C Oliveros "}, {"type": "b", "children": [{"type": "t", "text": "Automatic detection of genomic regions with informative epigenetic patterns."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12864-018-5286-5"}], "href": "https://doi.org/10.1186/s12864-018-5286-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30486775"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30486775"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xuemei Piao, Jieru Zhou, Jiandong Hu "}, {"type": "b", "children": [{"type": "t", "text": "Role of RP11-83J16.1, a novel long non-coding RNA, in rheumatoid arthritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2020)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32355550"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32355550"}]}]}]}
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| Synonyms | NCRNA-A5 |
| NCBI Gene ID | 100874055 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00570 has 388 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for LINC00570 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00570 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00570 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00570 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00570 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00570 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00570 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00570 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |