LINC00572 Gene

Name long intergenic non-protein coding RNA 572
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts actually mention LINC00572, a careful reading of these studies reveals critical roles for spliceosome components—namely, ZRSR1 and ZRSR2—in regulating alternative splicing events that are essential for proper development and hematopoiesis. In early embryogenesis, mutations in Zrsr1 and Zrsr2 disrupt the recognition and removal of both U2- and U12-type introns, resulting in profound intron retention, dysregulation of gene expression during zygotic genome activation, and a failure to transition from the 2‐cell to further embryonic stages. This study demonstrates that efficient splicing is vital for the conversion of induced pluripotent stem cells into a 2C-like state."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of hematopoietic development and disease, targeted deletion or mutation of ZRSR2 in mice leads to mis‐splicing of U12-type introns in myeloid progenitors. However, the presence of its homolog Zrsr1 in murine cells appears to compensate for the loss to some extent, as knockout mice display only moderate splicing defects and maintain normal hematopoiesis. This evidence underlines a collective role for both ZRSR1 and ZRSR2 in maintaining proper splicing fidelity during myeloid differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA further study investigating the cooperative impact of spliceosome dysfunction and epigenetic alteration shows that combining Zrsr2 mutation with loss of the epigenetic regulator Tet2 results in an MDS-like disease phenotype. In these mice, aberrant splicing affects critical signaling pathways such as MAPK, contributing to impaired differentiation and altered transcriptomic profiles in hematopoietic stem and progenitor cells. This work reinforces the concept that disruptions in the machinery for U12-dependent intron splicing can have wide-ranging effects on cell fate and may cooperate with epigenetic changes to promote disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, although LINC00572 is not directly discussed in these abstracts, the functional insights provided regarding the critical splicing factors ZRSR1 and ZRSR2 suggest that any putative role for LINC00572 would likely involve modulation of similar alternative splicing processes that affect early embryo development and hematopoietic homeostasis. Future studies may reveal whether LINC00572 participates in or regulates these spliceosomal networks, thereby influencing developmental transitions and disease states.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Isabel Gómez-Redondo, Priscila Ramos-Ibeas, Eva Pericuesta, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Minor Splicing Factors "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "Zrsr1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " and "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "Zrsr2"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " Are Essential for Early Embryo Development and 2-Cell-Like Conversion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms21114115"}], "href": "https://doi.org/10.3390/ijms21114115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32527007"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32527007"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Vikas Madan, Zeya Cao, Weoi Woon Teoh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZRSR1 co-operates with ZRSR2 in regulating splicing of U12-type introns in murine hematopoietic cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Haematologica (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3324/haematol.2020.260562"}], "href": "https://doi.org/10.3324/haematol.2020.260562"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33691379"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33691379"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Cristian Garcia-Ruiz, Cristina Martínez-Valiente, Lourdes Cordón, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Concurrent Zrsr2 mutation and Tet2 loss promote myelodysplastic neoplasm in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Leukemia (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41375-022-01674-2"}], "href": "https://doi.org/10.1038/s41375-022-01674-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36030305"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36030305"}]}]}]}
NCBI Gene ID 100861573
API
Download Associations
Predicted Functions View LINC00572's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00572's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00572's ARCHS4 Predicted Functions.

Functional Associations

LINC00572 has 11 functional associations with biological entities spanning 4 categories (organism, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for LINC00572 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00572 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00572 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00572 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00572 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00572 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00572 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.