LINC00575 Gene

Name long intergenic non-protein coding RNA 575
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00575 is a long non‐coding RNA located within the chromosomal region 4q21.21–q21.22. Although its specific biological role has not been directly characterized in the available studies, its inclusion in a de novo microtriplication that spans nine genes—including BMP3, PRKG2, RASGEF1B, HNRNPD, HNRPDL, ENOPH1, TMEM150C, LINC00575, and SCD5—suggests that altered dosage of this region may contribute to neurodevelopmental abnormalities. In the reported patient, phenotypic features such as developmental delay, absence of speech, macrocephaly, and other dysmorphic traits overlapped with those seen in 4q21 microdeletion syndrome, implying that gains or losses within this region, potentially including aberrant expression of LINC00575, could be involved in the pathogenesis of such developmental disorders (1,2).\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In contrast, an independent study focusing on the retina and retinal pigment epithelium (RPE) transcriptome identified novel genes with retina/RPE‐specific expression but did not report on LINC00575. This highlights that while several novel transcripts have been characterized in specialized tissues, the functional contributions of LINC00575 remain to be elucidated, particularly in the context of chromosomal copy number variations and associated clinical phenotypes."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "H L Schulz, F A Rahman, F M Fadl El Moula, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cytogenet Genome Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000078564"}], "href": "https://doi.org/10.1159/000078564"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15218245"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15218245"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Igor N Lebedev, Lyudmila P Nazarenko, Nikolay A Skryabin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A de novo microtriplication at 4q21.21-q21.22 in a patient with a vascular malignant hemangioma, elongated sigmoid colon, developmental delay, and absence of speech."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet A (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.a.37754"}], "href": "https://doi.org/10.1002/ajmg.a.37754"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27288323"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27288323"}]}]}]}
Synonyms C4ORF11
Proteins CD011_HUMAN
NCBI Gene ID 439934
API
Download Associations
Predicted Functions View LINC00575's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00575's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00575's ARCHS4 Predicted Functions.

Functional Associations

LINC00575 has 426 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for LINC00575 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00575 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00575 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00575 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00575 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00575 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00575 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00575 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with LINC00575 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00575 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00575 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00575 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00575 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00575 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00575 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00575 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00575 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores tissues co-occuring with LINC00575 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.