LINC00578 Gene

Name long intergenic non-protein coding RNA 578
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Across several studies investigating various cancer types, LINC00578 has emerged as a long non‐coding RNA with significant clinical and functional implications. In lung adenocarcinoma, LINC00578 was found to be markedly upregulated in tumor tissues where its increased expression was strongly associated with the presence of metastasis and poorer patient survival. Moreover, in an analysis of copy number alterations, LINC00578 amplification correlated with improved overall survival, suggesting that its dosage effects may have a complex, context‐dependent role in tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In pancreatic cancer, high levels of LINC00578 were observed in both tissue and serum samples, and elevated expression was correlated with more advanced clinical stages and reduced survival rates. Functional experiments demonstrated that silencing LINC00578 inhibited pancreatic cancer cell proliferation, suggesting a pro‐tumorigenic (oncogenic) role for this lncRNA in this context."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Additionally, LINC00578 has been incorporated into prognostic risk models for breast cancer. Within signatures associated with autophagy, immune response, and cancer stem cell characteristics, its expression contributes to stratifying patients according to risk, thereby highlighting its potential as a biomarker and therapeutic target. Although the exact molecular mechanisms remain to be fully elucidated, its consistent inclusion in multiple prognostic panels underscores its clinical relevance across tumor types."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Bing Zhao, Hang Xu, Xiaoye Ai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression profiles of long noncoding RNAs in lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S167633"}], "href": "https://doi.org/10.2147/OTT.S167633"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30233202"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30233202"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Li Wang, Hongying Zhao, Yingqi Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Systematic identification of lincRNA-based prognostic biomarkers by integrating lincRNA expression and copy number variation in lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Cancer (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ijc.31865"}], "href": "https://doi.org/10.1002/ijc.31865"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30226269"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30226269"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Baogang Zhang, Changfeng Li, Zhixia Sun "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00346, LINC00578, LINC00673, LINC00671, LINC00261, and SNHG9 are novel prognostic markers for pancreatic cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2018)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30210701"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30210701"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiaoying Li, Feng Jin, Yang Li "}, {"type": "b", "children": [{"type": "t", "text": "A novel autophagy-related lncRNA prognostic risk model for breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.15980"}], "href": "https://doi.org/10.1111/jcmm.15980"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33216456"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33216456"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Wei Ma, Fangkun Zhao, Xinmiao Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Immune-related lncRNAs as predictors of survival in breast cancer: a prognostic signature."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-020-02522-6"}], "href": "https://doi.org/10.1186/s12967-020-02522-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33225954"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33225954"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xiaoying Li, Yang Li, Xinmiao Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and validation of stemness-related lncRNA prognostic signature for breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-020-02497-4"}], "href": "https://doi.org/10.1186/s12967-020-02497-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32867770"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32867770"}]}]}]}
NCBI Gene ID 100505566
API
Download Associations
Predicted Functions View LINC00578's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00578's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00578's ARCHS4 Predicted Functions.

Functional Associations

LINC00578 has 602 functional associations with biological entities spanning 4 categories (organism, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LINC00578 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00578 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00578 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00578 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00578 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00578 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00578 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00578 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00578 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00578 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00578 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.