LINC00583 Gene

Name long intergenic non-protein coding RNA 583
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although none of the three studies explicitly focused on LINC00583, they provide context for understanding how long non‐coding RNAs (lncRNAs) – the family to which LINC00583 belongs – may contribute to the regulation of complex traits and diseases. In one study investigating frailty in older adults, variation in the 9p21–23 region was associated with increased risk of frailty, a finding that raises the possibility that lncRNAs in this genomic hotspot could modulate age‐related processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, an extensive genome‐wide association analysis of plasma levels of coagulation factors implicated regulatory elements in the modulation of key hemostatic proteins, suggesting that non-coding transcripts might influence thrombotic risk through effects on endothelial function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Finally, a large integrative eQTL study across multiple cancer types highlighted how ncRNAs can be linked to cancer-related traits and patient survival, reinforcing the concept that lncRNAs serve as important regulatory molecules in human disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n By extrapolation, the function of LINC00583 – as a member of the lncRNA family – may involve modulation of gene expression networks that contribute to aging phenotypes, hemostatic balance, and cancer biology. Further focused experiments are needed to define its precise mechanistic roles in these complex biological processes.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Sanish Sathyan, Nir Barzilai, Gil Atzmon, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic Insights Into Frailty: Association of 9p21-23 Locus With Frailty."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Med (Lausanne) (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fmed.2018.00105"}], "href": "https://doi.org/10.3389/fmed.2018.00105"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29765957"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29765957"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Maria Sabater-Lleal, Jennifer E Huffman, Paul S de Vries, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-Wide Association Transethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.118.034532"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.118.034532"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30586737"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30586737"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jiang Li, Yawen Xue, Muhammad Talal Amin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ncRNA-eQTL: a database to systematically evaluate the effects of SNPs on non-coding RNA expression across cancer types."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkz711"}], "href": "https://doi.org/10.1093/nar/gkz711"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31410488"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31410488"}]}]}]}
Synonyms C9ORF146
NCBI Gene ID 100113404
API
Download Associations
Predicted Functions View LINC00583's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00583's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00583's ARCHS4 Predicted Functions.

Functional Associations

LINC00583 has 221 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for LINC00583 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00583 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00583 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with LINC00583 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00583 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00583 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00583 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00583 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00583 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00583 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00583 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with LINC00583 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00583 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00583 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.