LINC00589 Gene

Name long intergenic non-protein coding RNA 589
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00589 appears to function as a tumor‐suppressive long non‐coding RNA that, when expressed at higher levels, can inhibit key oncogenic processes. In non‐small cell lung cancer, for example, overexpression of the lncRNA (reported as TSLNC8 in this study) markedly suppressed cell proliferation, migration, and invasion, while simultaneously promoting apoptosis. This tumor‐suppressive effect was associated with the modulation of autophagy‐related proteins and the inhibition of the IL‑6/STAT3/HIF‑1α signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, emerging gene therapy strategies for hepatocellular carcinoma are increasingly considering the targeting of key genes, including lncRNAs like LINC00589, to overcome the limitations of current treatments and drug resistance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Additionally, analyses of RNA expression profiles in glioblastoma patients have indicated that long non‐coding RNAs hold promise as components of prognostic signatures. Although the specific roles of individual lncRNAs such as LINC00589 are still under investigation in this context, their inclusion in multi‐RNA prognostic models underscores their potential as biomarkers for patient stratification and outcome prediction."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies suggest that LINC00589 acts as a tumor suppressor by interfering with cancer cell survival pathways and may serve as both a therapeutic target and a prognostic indicator across diverse cancer types.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hanli Fan, Jianbo Li, Jiwu Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNAs (lncRNAs) Tumor-Suppressive Role of lncRNA on Chromosome 8p12 (TSLNC8) Inhibits Tumor Metastasis and Promotes Apoptosis by Regulating Interleukin 6 (IL-6)/Signal Transducer and Activator of Transcription 3 (STAT3)/Hypoxia-Inducible Factor 1-alpha (HIF-1α) Signaling Pathway in Non-Small Cell Lung Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/MSM.917565"}], "href": "https://doi.org/10.12659/MSM.917565"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31601776"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31601776"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Saranya Chidambaranathan Reghupaty, Devanand Sarkar "}, {"type": "b", "children": [{"type": "t", "text": "Current Status of Gene Therapy in Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancers (Basel) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cancers11091265"}], "href": "https://doi.org/10.3390/cancers11091265"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31466358"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31466358"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Zhenyu Gong, Fan Hong, Hongxiang Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An eight-mRNA signature outperforms the lncRNA-based signature in predicting prognosis of patients with glioblastoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Med Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12881-020-0992-7"}], "href": "https://doi.org/10.1186/s12881-020-0992-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32188434"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32188434"}]}]}]}
Synonyms C8ORF75, TSLNC8
NCBI Gene ID 619351
API
Download Associations
Predicted Functions View LINC00589's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00589's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00589's ARCHS4 Predicted Functions.

Functional Associations

LINC00589 has 571 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 20 datasets.

Click the + buttons to view associations for LINC00589 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00589 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00589 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00589 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00589 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00589 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00589 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00589 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00589 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing LINC00589 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00589 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00589 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00589 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00589 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00589 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00589 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00589 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00589 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00589 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00589 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00589 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.