LINC00596 Gene

Name long intergenic non-protein coding RNA 596
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although the study by itself (1) does not provide a direct functional characterization of LINC00596, its identification among the genetic regions linked to the mucinous tumor phenotype in colorectal cancer suggests that LINC00596, a long noncoding RNA, may be involved in the regulation of gene expression that contributes to this aggressive tumor subtype. In this context, genetic variants in regions that potentially include LINC00596 were associated with significant improvements in discriminating mucinous tumors from non‐mucinous ones, implying that LINC00596 could play a role in modulating the molecular pathways underlying mucinous histology. However, further investigations are needed to elucidate the precise mechanisms by which LINC00596 influences colorectal cancer pathogenesis and to determine whether it might serve as a useful biomarker or therapeutic target."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Michelle E Penney, Patrick S Parfrey, Sevtap Savas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomark Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s40364-018-0133-z"}], "href": "https://doi.org/10.1186/s40364-018-0133-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29942513"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29942513"}]}]}]}
Synonyms C14ORF165, CNSLT1I7G
Proteins CN165_HUMAN
NCBI Gene ID 414767
API
Download Associations
Predicted Functions View LINC00596's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00596's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00596's ARCHS4 Predicted Functions.

Functional Associations

LINC00596 has 448 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for LINC00596 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00596 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00596 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing LINC00596 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores diseases associated with LINC00596 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00596 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00596 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00596 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00596 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00596 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00596 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00596 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00596 protein from the LOCATE Predicted Protein Localization Annotations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00596 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00596 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores tissues with high expression of LINC00596 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset.