LINC00609 Gene

Name long intergenic non-protein coding RNA 609
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00609 displays context‐dependent roles in human disease. In lung cancer, for example, data derived from The Cancer Genome Atlas indicate that smoking is associated with multiple long non‐coding RNA alterations. In female lung adenocarcinoma patients, the smoking index is negatively correlated with LINC00609 expression, suggesting that decreased expression of LINC00609 may be linked to smoking‐induced molecular changes in this cancer type."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, in glioblastoma, LINC00609 is one component of an epithelial–mesenchymal transition (EMT)–related prognostic signature that is upregulated and associated with metastasis‐ and immune response–related pathways; its inclusion in this signature implies a potential role in tumor aggressiveness and poor patient prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Although no direct association of LINC00609 was reported in the context of oligodendrocyte pathology and neurodegeneration in multiple sclerosis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", these findings together underscore that LINC00609 may function in a disease‐ and tissue‐specific manner, potentially acting as a biomarker and modulator of cellular states in cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Bing Liu, Yuan Liu, Jingfeng Zou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Smoking is Associated with Lung Adenocarcinoma and Lung Squamous Cell Carcinoma Progression through Inducing Distinguishing lncRNA Alterations in Different Genders."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Anticancer Agents Med Chem (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1871520621666210727115147"}], "href": "https://doi.org/10.2174/1871520621666210727115147"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34315392"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34315392"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "XinJie Yang, Sha Niu, JiaQiang Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of an epithelial-mesenchymal transition-related lncRNA prognostic signature for patients with glioblastoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-03213-y"}], "href": "https://doi.org/10.1038/s41598-021-03213-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34880375"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34880375"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Sarah Jäkel, Eneritz Agirre, Ana Mendanha Falcão, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Altered human oligodendrocyte heterogeneity in multiple sclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41586-019-0903-2"}], "href": "https://doi.org/10.1038/s41586-019-0903-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30747918"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30747918"}]}]}]}
NCBI Gene ID 101101773
API
Download Associations
Predicted Functions View LINC00609's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00609's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00609's ARCHS4 Predicted Functions.

Functional Associations

LINC00609 has 41 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for LINC00609 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00609 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00609 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00609 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with LINC00609 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00609 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.