LINC00616 Gene

Name long intergenic non-protein coding RNA 616
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00616 is one of a set of long non‐coding RNAs that have been identified as consistently differentially expressed in human germ cells, suggesting a potential regulatory role in spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Its altered expression pattern, discovered through comparative analyses of multiple RNA‐seq studies on various germ cell populations, implicates LINC00616 in the modulation of key genes involved in processes such as cell proliferation, differentiation, and cell cycle regulation. Although the precise mechanistic function of LINC00616 remains to be fully elucidated, its association with potential targets—including genes related to centromere function, cytoskeletal organization, and cell cycle checkpoints—highlights its promise as a candidate for further investigation into its contribution to the regulation of spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Meghali Joshi, Singh Rajender "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reprod Biol Endocrinol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12958-020-00660-6"}], "href": "https://doi.org/10.1186/s12958-020-00660-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33126901"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33126901"}]}]}]}
NCBI Gene ID 641365
API
Download Associations
Predicted Functions View LINC00616's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00616's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00616's ARCHS4 Predicted Functions.

Functional Associations

LINC00616 has 165 functional associations with biological entities spanning 4 categories (organism, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for LINC00616 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00616 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00616 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00616 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00616 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00616 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00616 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00616 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.