LINC00638 Gene

Name long intergenic non-protein coding RNA 638
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00638 is a long non‐coding RNA that appears to play multifaceted roles in regulating inflammatory responses, oxidative stress, and immune modulation across several disease contexts. In rheumatoid arthritis (RA), studies have demonstrated that LINC00638 is down‐regulated in peripheral blood mononuclear cells and in fibroblast-like synoviocytes. Its reduced expression is associated with enhanced inflammatory cytokines and heightened oxidative stress, whereas its overexpression can down-regulate pro-inflammatory mediators (e.g., TNF-α, IL-6) and up-regulate anti-inflammatory factors (e.g., IL-4, IL-10) as well as antioxidant enzymes, suggesting a protective role against RA progression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In hepatocellular carcinoma (HCC), LINC00638 is incorporated into an eight-lncRNA prognostic model and is implicated in a ceRNA network, specifically forming the LINC00638/miR-4732-3p/ULBP1 axis. This axis is proposed to regulate natural killer cell infiltration and may contribute to immune escape mechanisms associated with high tumor mutation burden, thereby correlating with a poorer prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, LINC00638 has emerged as one of the key molecules linked to altered self-perception in RA patients, indicating that its dysregulated expression may reflect or contribute to patient-reported outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similarly, in the context of neonatal sepsis, LINC00638 is identified as a hub node within a competing endogenous RNA network enriched for immune-related functions, underscoring its potential as a diagnostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Lastly, bioinformatics analyses in lumbar disc degeneration have recognized LINC00638 as one of the key regulatory lncRNAs involved in pathways related to cellular organization, gene expression, and metabolic regulation, further supporting its role in disease progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Y Sun, J Liu, L Xin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[The low expression of long non-coding RNA Linc00638 contributes to rheumatoid arthritis progression by regulating inflammation and oxidative stress]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nan Fang Yi Ke Da Xue Xue Bao (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12122/j.issn.1673-4254.2021.07.01"}], "href": "https://doi.org/10.12122/j.issn.1673-4254.2021.07.01"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34308844"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34308844"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yanqiu Sun, Jian Liu, Qin Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of LINC00638 in rheumatoid arthritis patients with damp-heat obstruction syndrome and the regulatory mechanisms for inflammation and oxidative stress."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zhong Nan Da Xue Xue Bao Yi Xue Ban (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.11817/j.issn.1672-7347.2022.210376"}], "href": "https://doi.org/10.11817/j.issn.1672-7347.2022.210376"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35545408"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35545408"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jianting Wen, Jian Liu, Bing Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prediction of Self-Perception of Patient in Rheumatoid Arthritis With the Key RNAs Expression Profiles."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Med (Lausanne) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fmed.2020.00567"}], "href": "https://doi.org/10.3389/fmed.2020.00567"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33072778"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33072778"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Feng Qi, Xiaojing Du, Zhiying Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor Mutation Burden-Associated LINC00638/miR-4732-3p/ULBP1 Axis Promotes Immune Escape "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "via"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " PD-L1 in Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.729340"}], "href": "https://doi.org/10.3389/fonc.2021.729340"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34568062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34568062"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ling Liu, Hong Wang, Xiaofei Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Potential Biomarkers in Neonatal Sepsis by Establishing a Competitive Endogenous RNA Network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Comb Chem High Throughput Screen (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1386207323666200401121204"}], "href": "https://doi.org/10.2174/1386207323666200401121204"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32233999"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32233999"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Y-H Zhang, J Song, L Shen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Systematic identification of lncRNAs and circRNAs-associated ceRNA networks in human lumbar disc degeneration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biotech Histochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/10520295.2019.1622782"}], "href": "https://doi.org/10.1080/10520295.2019.1622782"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31271316"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31271316"}]}]}]}
NCBI Gene ID 196872
API
Download Associations
Predicted Functions View LINC00638's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00638's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00638's ARCHS4 Predicted Functions.

Functional Associations

LINC00638 has 1,012 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for LINC00638 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00638 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00638 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00638 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00638 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00638 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00638 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00638 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00638 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00638 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00638 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00638 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00638 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00638 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.