LINC00640 Gene

Name long intergenic non-protein coding RNA 640
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have highlighted the involvement of long non‐coding RNAs in diverse human diseases. In a genome‐wide association study of non‐syndromic cleft lip with palate, LINC00640 was identified among several genomic loci associated with an increased risk of developing this common craniofacial malformation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although the precise molecular function of LINC00640 remains to be elucidated, its inclusion as a susceptibility locus suggests that it may have a regulatory role in craniofacial development or related biological pathways. In contrast, an independent study investigating Kaposi’s sarcoma-associated herpesvirus reactivation uncovered a distinct long non-coding RNA, LINC00313, which acts as an angiogenic repressor in endothelial cells and whose activity is counteracted by the HIV Tat protein."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Together, these findings underscore the multifaceted contributions of long non-coding RNAs in human pathology, with LINC00640 potentially impacting developmental processes that lead to craniofacial malformations.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yanqin Yu, Xianbo Zuo, Miao He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms14364"}], "href": "https://doi.org/10.1038/ncomms14364"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28232668"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28232668"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Wan-Shan Yang, Ting-Yu Lin, Lung Chang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HIV-1 Tat Interacts with a Kaposi's Sarcoma-Associated Herpesvirus Reactivation-Upregulated Antiangiogenic Long Noncoding RNA, LINC00313, and Antagonizes Its Function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Virol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/JVI.01280-19"}], "href": "https://doi.org/10.1128/JVI.01280-19"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31723026"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31723026"}]}]}]}
NCBI Gene ID 283553
API
Download Associations
Predicted Functions View LINC00640's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00640's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00640's ARCHS4 Predicted Functions.

Functional Associations

LINC00640 has 405 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for LINC00640 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00640 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00640 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00640 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00640 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00640 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00640 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.