LINC00649 Gene

Name long intergenic non-protein coding RNA 649
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00649 is a long intergenic non‐coding RNA that has emerged as an important regulator in a range of human diseases, particularly in various cancers. In gastric cancer, LINC00649 is enriched in tumor tissues and functions as an oncogene by accelerating cell proliferation, migration, and epithelial–mesenchymal transition (EMT)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In acute myeloid leukemia (AML), its aberrant expression has been incorporated into prognostic models where altered levels are associated with clinical outcomes, suggesting its utility as a prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Similarly, in triple‐negative breast cancer, investigations are underway to elucidate its role in promoting cellular proliferation, invasion, and migration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In lung squamous cell carcinoma, LINC00649 is upregulated through transcriptional activation by E2F7; it subsequently recruits TAF15 to stabilize MAPK6 expression, thereby activating the MAPK signaling pathway and driving tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In bladder cancer, elevated LINC00649 enhances cell proliferation, migration, and invasion by acting as a molecular sponge for miR‑16‑5p, which in turn leads to the upregulation of JARID2."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Its role in colorectal cancer is similarly oncogenic: high expression levels correlate with a poor prognosis, while knockdown studies have demonstrated reduced proliferation, migration, and invasion alongside increased apoptosis, potentially via interactions with miR‑432‑5p."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond cancer, LINC00649 has also been identified in competing endogenous RNA networks related to multiple sclerosis, indicating its broader relevance in disease pathogenesis and its promise as a candidate for biomarker discovery and therapeutic intervention."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies reveal that LINC00649 exerts significant regulatory effects on key cellular processes such as proliferation, migration, invasion, and apoptosis across various malignancies and diseases. Its diverse roles not only underscore its potential as a diagnostic and prognostic biomarker but also highlight the possibility of targeting LINC00649 for therapeutic development.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hongyan Wang, Xin Di, Yingjie Bi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00649 regulates YES-associated protein 1 (YAP1)/Hippo pathway to accelerate gastric cancer (GC) progression via sequestering miR-16-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1924554"}], "href": "https://doi.org/10.1080/21655979.2021.1924554"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33975517"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33975517"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chao Guo, Qian-Qian Ju, Chun-Xia Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of HOXA10 is associated with unfavorable prognosis of acute myeloid leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-020-07088-6"}], "href": "https://doi.org/10.1186/s12885-020-07088-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32571260"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32571260"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Chao Guo, Ya-Yue Gao, Qian-Qian Ju, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00649 underexpression is an adverse prognostic marker in acute myeloid leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-020-07331-0"}], "href": "https://doi.org/10.1186/s12885-020-07331-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32883226"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32883226"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jianhua Zhang, Chuang Du, Linfeng Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00649 promotes the growth and metastasis of triple-negative breast cancer by maintaining the stability of HIF-1α through the NF90/NF45 complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384101.2022.2040283"}], "href": "https://doi.org/10.1080/15384101.2022.2040283"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35188449"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35188449"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Huaiyang Zhu, Qingyuan Liu, Xiaobo Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00649 recruits TAF15 and enhances MAPK6 expression to promote the development of lung squamous cell carcinoma via activating MAPK signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Gene Ther (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41417-021-00410-9"}], "href": "https://doi.org/10.1038/s41417-021-00410-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35228660"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35228660"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yongsong Liu, Xiande Huang, Lijun Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00649 Facilitates the Cellular Process of Bladder Cancer Cells via Signaling Axis miR-16-5p/JARID2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Urol Int (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000506239"}], "href": "https://doi.org/10.1159/000506239"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33789312"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33789312"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xuanyu Chen, Song Chen "}, {"type": "b", "children": [{"type": "t", "text": "LINC00649 promotes bladder cancer malignant progression by regulating the miR‑15a‑5p/HMGA1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2021.7959"}], "href": "https://doi.org/10.3892/or.2021.7959"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33649788"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33649788"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Junjie Bao, Xiaokai Bi, Jingbo Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00649 functions as a microRNA‑432‑5p sponge to facilitate tumourigenesis in colorectal cancer by upregulating HDGF."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2022.12620"}], "href": "https://doi.org/10.3892/mmr.2022.12620"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35088877"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35088877"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Minjie He, Yan Lin, Yuzhen Xu "}, {"type": "b", "children": [{"type": "t", "text": "Identification of prognostic biomarkers in colorectal cancer using a long non-coding RNA-mediated competitive endogenous RNA network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.9936"}], "href": "https://doi.org/10.3892/ol.2019.9936"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30854042"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30854042"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Tianfeng Wang, Si Xu, Li Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrated analysis of differentially expressed genes and a ceRNA network to identify hub lncRNAs and potential drugs for multiple sclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2022)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35273684"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35273684"}]}]}]}
NCBI Gene ID 100506334
API
Download Associations
Predicted Functions View LINC00649's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00649's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00649's ARCHS4 Predicted Functions.

Functional Associations

LINC00649 has 703 functional associations with biological entities spanning 3 categories (organism, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for LINC00649 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00649 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00649 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00649 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00649 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00649 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00649 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00649 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.