LINC00657 Gene

Name long intergenic non-protein coding RNA 657
Description Predicted to enable protein sequestering activity. Predicted to be involved in several processes, including determination of adult lifespan; hair follicle development; and skeletal muscle fiber development. Predicted to be active in cytoplasm. Biomarker of lung non-small cell carcinoma. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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In several cancer types—such as breast cancer, non‐small cell lung cancer, osteosarcoma, colorectal cancer, and prostate cancer—it is frequently upregulated and promotes tumor progression by sponging specific microRNAs (including miR‑26b‑5p, miR‑106a‑5p, miR‑199a‑3p, and miR‑541‑3p) to indirectly elevate the expression of oncogenic factors such as COMMD8, promote cell proliferation, enhance migration, induce epithelial‐to‐mesenchymal transition, and even contribute to therapy resistance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "7"}]}, {"type": "t", "text": " Conversely, studies in hepatocellular and cervical cancers have reported downregulation of LINC00657, where its overexpression suppresses malignant phenotypes by modulating microRNA networks—for instance, enhancing PTEN expression or promoting the RUNX3/DR5 axis—and thereby inhibiting proliferation, migration, invasion, and tumor growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " In addition, LINC00657 has been implicated in non-cancerous conditions: for example, it is upregulated following nerve injury and contributes to the development of neuropathic pain via a miR‑136/ZEB1-mediated neuroinflammatory mechanism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Collectively, these findings demonstrate that LINC00657/NORAD is a multifunctional regulator whose ability to control genomic stability and modulate key signaling networks through microRNA interactions renders it a potential diagnostic biomarker and therapeutic target in diverse pathological contexts.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Sungyul Lee, Florian Kopp, Tsung-Cheng Chang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNAs as prognostic markers in human breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.7828"}], "href": "https://doi.org/10.18632/oncotarget.7828"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26942882"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26942882"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Rui Zhang, Zequn Niu, Honghong Pei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00657 induced by SP1 contributes to the non-small cell lung cancer progression through targeting miR-26b-5p/COMMD8 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29222"}], "href": "https://doi.org/10.1002/jcp.29222"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31566716"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31566716"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xuming Wang, Jilong Zou, Hongjun Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA NORAD regulates cancer cell proliferation and migration in human osteosarcoma by endogenously competing with miR-199a-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "IUBMB Life (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/iub.2064"}], "href": "https://doi.org/10.1002/iub.2064"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31169973"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31169973"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Emma L Rowbotham, Andrew J Grainger "}, {"type": "b", "children": [{"type": "t", "text": "VIDEO: Ultrasound Evaluation of External Shoulder Impingement."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "AJR Am J Roentgenol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2214/AJR.18.19534"}], "href": "https://doi.org/10.2214/AJR.18.19534"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29927333"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29927333"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Chuan-Yi Hu, Juan Chen, Xin-Hua Qin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA NORAD promotes the prostate cancer cell extracellular vesicle release via microRNA-541-3p-regulated PKM2 to induce bone metastasis of prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-021-01891-0"}], "href": "https://doi.org/10.1186/s13046-021-01891-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33722248"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33722248"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Bingren Hu, Huajie Cai, Ru Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA 657 suppresses hepatocellular carcinoma cell growth by acting as a molecular sponge of miR-106a-5p to regulate PTEN expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biochem Cell Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biocel.2017.09.008"}], "href": "https://doi.org/10.1016/j.biocel.2017.09.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28919047"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28919047"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Stefano Corra, Christiaan de Vet, Jessica Groppi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Chemical On/Off Switching of Mechanically Planar Chirality and Chiral Anion Recognition in a [2]Rotaxane Molecular Shuttle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Chem Soc (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/jacs.9b00941"}], "href": "https://doi.org/10.1021/jacs.9b00941"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31129959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31129959"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Fujin Shen, Hongyun Zheng, Limei Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00657 expedites neuropathic pain development by modulating miR-136/ZEB1 axis in a rat model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.27466"}], "href": "https://doi.org/10.1002/jcb.27466"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30203524"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30203524"}]}]}]}
Synonyms NORAD
NCBI Gene ID 647979
API
Download Associations
Predicted Functions View LINC00657's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00657's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00657's ARCHS4 Predicted Functions.

Functional Associations

LINC00657 has 903 functional associations with biological entities spanning 5 categories (organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for LINC00657 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00657 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00657 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00657 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00657 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00657 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00657 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00657 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00657 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00657 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00657 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00657 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00657 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00657 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00657 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by LINC00657 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00657 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00657 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.