LINC00661 Gene

Name long intergenic non-protein coding RNA 661
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In cholangiocarcinoma (CCA), LINC00661 is one of three autophagy‐related long noncoding RNAs identified as part of a prognostic signature that distinguishes patients with markedly different overall survival outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Elevated expression of LINC00661 in CCA tissues, relative to normal tissues, suggests its involvement in tumor progression by potentially modulating autophagy‐related pathways as well as influencing the tumor immune microenvironment. Furthermore, LINC00661 appears to participate in competing endogenous RNA networks, where it may regulate mRNA expression through interactions with specific miRNAs. This multifaceted role underscores its promise not only as a prognostic biomarker but also as a target for tailored therapeutic strategies in CCA."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ya Jun Liu, Alphonse Houssou Hounye, Zheng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and Validation of Three Autophagy-Related Long Noncoding RNAs as Prognostic Signature in Cholangiocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.780601"}], "href": "https://doi.org/10.3389/fonc.2021.780601"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34926294"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34926294"}]}]}]}
NCBI Gene ID 126536
API
Download Associations
Predicted Functions View LINC00661's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00661's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00661's ARCHS4 Predicted Functions.

Functional Associations

LINC00661 has 242 functional associations with biological entities spanning 4 categories (organism, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for LINC00661 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00661 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00661 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00661 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00661 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00661 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00661 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00661 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00661 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00661 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.