LINC00662 Gene

Name long intergenic non-protein coding RNA 662
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00662 is a long intergenic non‐coding RNA that has emerged as a multifunctional oncogenic regulator in a wide range of human cancers. Numerous independent studies have demonstrated that its expression is frequently up‐regulated in tumor tissues – including hepatocellular carcinoma, gastric cancer, lung cancer, prostate cancer, acute myeloid leukemia, chordoma, breast cancer, esophageal squamous cell carcinoma, melanoma, colorectal cancer, osteosarcoma, glioma, and bladder cancer – and that high levels of LINC00662 are consistently associated with aggressive clinicopathological features, poor prognosis, and resistance to chemotherapy or radiotherapy."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "32"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Mechanistically, LINC00662 exerts its oncogenic effects primarily through its function as a competing endogenous RNA (ceRNA). It sequesters and “sponges” various microRNAs – such as miR‐15a, miR‐16, miR‐107, miR‐497‐5p, miR‐320d, miR‐340‐5p, miR‐34a, miR‐144‐3p, miR‐103a‐3p, among others – which in turn leads to the de‐repression and up‐regulation of key downstream target genes (including, but not limited to, WNT3A, YAP1, Lin28, E2F1, CDC25A, HOXB2, ELK3, CEP55, Notch2, and others) that drive cell proliferation, migration, invasion, epithelial–mesenchymal transition (EMT), and metastasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "4"}, {"type": "fg_f", "ref": "9"}, {"type": "fg_f", "ref": "12"}, {"type": "fg_fs", "start_ref": "21", "end_ref": "25"}, {"type": "fg_f", "ref": "30"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, LINC00662 has been reported to influence a variety of oncogenic signaling pathways—notably the Wnt/β‐catenin, Hippo–YAP1, ERK, and p38 MAPK cascades—which further contribute to enhanced tumor cell proliferation, invasiveness, and maintenance of cancer stem cell properties."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "16", "end_ref": "20"}]}, {"type": "t", "text": " Some studies have also uncovered that LINC00662 can modulate the tumor microenvironment—for example, by promoting the secretion of factors that polarize macrophages toward a tumor‐promoting (M2) phenotype—and can affect cellular metabolism and even genomic methylation status via regulation of key metabolic enzymes and co‐factors.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its role in classical oncogenic processes, LINC00662 has been implicated in additional pathological contexts. Its regulatory functions have been linked to blood–brain barrier permeability in Alzheimer’s disease"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "33"}]}, {"type": "t", "text": "and to aspects of radiosensitivity in osteosarcoma and oral squamous cell carcinoma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}, {"type": "fg_f", "ref": "24"}]}, {"type": "t", "text": " Moreover, studies in reproductive biology indicate that LINC00662 is among a set of lncRNAs with differential expression during spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "34"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings highlight LINC00662 as a key oncogenic lncRNA whose multifaceted regulatory mechanisms—including its role as a microRNA sponge, its modulation of signal transduction pathways, and its interactions with RNA‐binding proteins—contribute to tumor initiation, progression, metastasis, and therapy resistance. Its widespread dysregulation across different malignancies underscores its potential as both a prognostic biomarker and a promising therapeutic target."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "10"}, {"type": "fg_fs", "start_ref": "12", "end_ref": "32"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiaohui Tian, Yuanyuan Wu, Yating Yang, et al. 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NCBI Gene ID 148189
API
Download Associations
Predicted Functions View LINC00662's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00662's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00662's ARCHS4 Predicted Functions.

Functional Associations

LINC00662 has 774 functional associations with biological entities spanning 5 categories (organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for LINC00662 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00662 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00662 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00662 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00662 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00662 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00662 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00662 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00662 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00662 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00662 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00662 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00662 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00662 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00662 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.