LINC00664 Gene

Name long intergenic non-protein coding RNA 664
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have revealed that LINC00664 plays multifaceted roles in the regulation of gene expression in various pathological contexts. In oral squamous cell carcinoma (OSCC), LINC00664 is significantly upregulated and acts as an oncogenic factor that promotes cell proliferation, migration, invasion, and epithelial–mesenchymal transition (EMT) by engaging in a positive feedback loop with the transcription factor KLF9 via sponging of miR-411-5p, thereby contributing to tumor progression and poor patient prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the context of cardiovascular disease, particularly myocardial fibrosis following acute myocardial infarction, LINC00664 has been implicated as a potential biomarker through its involvement in a competing endogenous RNA (ceRNA) network with hsa‑miR‑197‑3p and JAK2, suggesting a role in the fibrotic remodeling process."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Furthermore, integrative bioinformatics analyses in ovarian carcinoma have identified LINC00664 as one of the critical long noncoding RNAs whose aberrant expression is associated with an increased risk of recurrence, highlighting its potential as an independent prognostic marker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similarly, in colorectal cancer, inclusion of LINC00664 in an eight-lncRNA prognostic signature correlates with overall survival, possibly through regulation of oxygen metabolism–related processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n These findings collectively underscore the diverse biological functions of LINC00664, ranging from modulation of ceRNA networks in cardiovascular pathology to the promotion of oncogenic processes in multiple tumor types, thereby identifying it as a promising candidate for further study as both a biomarker and a potential therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yikang He, Yangfan Ye, Wei Tian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel lncRNA Panel Related to Ferroptosis, Tumor Progression, and Microenvironment is a Robust Prognostic Indicator for Glioma Patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Cell Dev Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fcell.2021.788451"}], "href": "https://doi.org/10.3389/fcell.2021.788451"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34950662"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34950662"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shuo Wang, Yuying Liu, Xitian Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of ceRNA (lncRNA-miRNA-mRNA) Regulatory Network in Myocardial Fibrosis After Acute Myocardial Infarction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Gen Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/IJGM.S329391"}], "href": "https://doi.org/10.2147/IJGM.S329391"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34984022"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34984022"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ying Chen, Fangfang Bi, Yuanyuan An, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of pathological grade and prognosis-associated lncRNA for ovarian cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.28704"}], "href": "https://doi.org/10.1002/jcb.28704"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31034644"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31034644"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Lin Zhang, Shuo Chen, Boxue Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An eight-long noncoding RNA expression signature for colorectal cancer patients' prognosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.27847"}], "href": "https://doi.org/10.1002/jcb.27847"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30320902"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30320902"}]}]}]}
NCBI Gene ID 400680
API
Download Associations
Predicted Functions View LINC00664's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00664's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00664's ARCHS4 Predicted Functions.

Functional Associations

LINC00664 has 641 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for LINC00664 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00664 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00664 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00664 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00664 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00664 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00664 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00664 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00664 protein from the LOCATE Predicted Protein Localization Annotations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00664 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.