| Name | long intergenic non-protein coding RNA 673 |
| Description | This gene produces a long non-protein coding RNA that is involved in the regulation of gene expression during tumor progression. This transcript can promote cell proliferation in gastric cancer through interaction with enhancer of zeste 2 and other epigenetic suppressors of gene expression, thereby downregulating target genes including Kruppel like factors 2 and 4. This transcript may also act as a tumor suppressor by promoting interaction between protein tyrosine phosphatase, non-receptor type 11 (Ptpn11) and ubiquitin ligase, resulting in degradation of Ptpn11 and lowered oncogenic signalling. Naturally-occurring variation at this locus results in the formation of a binding site for miR-1231, which negatively regulates activity of this transcript. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2017] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA LINC00673 has emerged as an important regulator of tumorigenesis, with its function appearing to be highly context‐dependent across different cancer types. In non‐small cell lung cancer (NSCLC), for example, LINC00673 is frequently upregulated and appears to act in an oncogenic manner. It can function as a competing endogenous RNA by “sponging” microRNAs (e.g. miR‐150–5p) to modulate key epithelial–mesenchymal transition (EMT) regulators such as ZEB1, and it may also repress tumor suppressors (such as NCALD) via interactions with epigenetic modifiers like LSD1, thereby promoting cell proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In lung adenocarcinoma a predominant transcript, LINC00673‐v4, enhances metastasis through facilitating the interaction between DDX3 and CK1ε, which in turn activates the WNT/β‐catenin pathway; similarly, overexpression of LINC00673 can reduce p53 translation, allowing tumor cells to escape senescence."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In breast cancer, LINC00673 exerts oncogenic effects by acting as a ceRNA that sponges miR-515–5p, thereby upregulating MARK4 expression and inactivating the Hippo signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Pancreatic cancer studies have yielded contrasting findings; one study indicates that LINC00673 can function as a tumor suppressor by reinforcing the interaction between PTPN11 and an E3 ubiquitin ligase to promote PTPN11 degradation – thereby attenuating SRC-ERK oncogenic signaling"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "—whereas other reports associate its elevated expression with poorer clinical outcomes"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "or suggest that LINC00673 may inhibit cancer progression through modulation of a miR-504/HNF1A axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " In papillary thyroid carcinoma, elevated levels of LINC00673 promote proliferation, migration, and invasion by recruiting epigenetic repressors (EZH2 and DNMT1) to suppress p53 expression"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": ", while in glioma, its upregulation is associated with enhanced cell migration and invasion via activation of the PI3K/AKT signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its direct functional roles, genetic polymorphisms in LINC00673—such as the rs11655237 variant—have been linked to cancer susceptibility. Some studies report that the polymorphism is associated with altered LINC00673 expression and an increased risk of cervical cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "and overall cancer susceptibility as supported by a meta‐analysis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": ", while in other tumors (for example, Wilms tumor) no significant association has been detected."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings demonstrate that LINC00673 modulates cancer cell behavior through multiple mechanisms—including microRNA sponging, epigenetic regulation, and alteration of key signaling pathways—with its role varying according to tumor type. This complex, context-dependent functionality underlines the potential of LINC00673 both as a prognostic biomarker and as a therapeutic target in diverse malignancies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "7"}, {"type": "fg_f", "ref": "6"}, {"type": "fg_f", "ref": "4"}, {"type": "fg_f", "ref": "2"}, {"type": "fg_fs", "start_ref": "8", "end_ref": "11"}, {"type": "fg_f", "ref": "5"}, {"type": "fg_fs", "start_ref": "12", "end_ref": "14"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wei Lu, Honghe Zhang, Yuequn Niu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA linc00673 regulated non-small cell lung cancer proliferation, migration, invasion and epithelial mesenchymal transition by sponging miR-150-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-017-0685-9"}], "href": "https://doi.org/10.1186/s12943-017-0685-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28697764"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28697764"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xuefei Shi, Chenhui Ma, Qingqing Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulation of long intergenic noncoding RNA 00673 promotes tumor proliferation via LSD1 interaction and repression of NCALD in non-small-cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.8338"}], "href": "https://doi.org/10.18632/oncotarget.8338"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27027352"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27027352"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qian Tan, Yalan Yu, Nandi Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of long non-coding RNA 00312 and 00673 in human NSCLC tissues."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2017.7196"}], "href": "https://doi.org/10.3892/mmr.2017.7196"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28849087"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28849087"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hongyu Guan, Ting Zhu, Shanshan Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00673-v4 promotes aggressiveness of lung adenocarcinoma via activating WNT/β-catenin signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1900997116"}], "href": "https://doi.org/10.1073/pnas.1900997116"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31235588"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31235588"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Anna Roth, Karine Boulay, Matthias Groß, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Targeting LINC00673 expression triggers cellular senescence in lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15476286.2018.1553481"}], "href": "https://doi.org/10.1080/15476286.2018.1553481"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30499379"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30499379"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Kun Qiao, Shipeng Ning, Lin Wan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-019-1421-7"}], "href": "https://doi.org/10.1186/s13046-019-1421-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31623640"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31623640"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Jian Zheng, Xudong Huang, Wen Tan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.3568"}], "href": "https://doi.org/10.1038/ng.3568"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27213290"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27213290"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Baogang Zhang, Changfeng Li, Zhixia Sun "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00346, LINC00578, LINC00673, LINC00671, LINC00261, and SNHG9 are novel prognostic markers for pancreatic cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Transl Res (2018)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30210701"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30210701"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Yi Gong, Hai-Su Dai, Jun-Jie Shu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LNC00673 suppresses proliferation and metastasis of pancreatic cancer via target miR-504/ HNF1A."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cancer (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/jca.32855"}], "href": "https://doi.org/10.7150/jca.32855"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31949497"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31949497"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "X-F Meng, L-Y Zhao, X-F Chu "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00673 inhibits p53 expression by interacting with EZH2 and DNMT1 in papillary thyroid carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201903_17249"}], "href": "https://doi.org/10.26355/eurrev_201903_17249"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30915752"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30915752"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Feng Zhang, Yuen Huang, Bata Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00673 silencing inhibits cell migration and invasion by suppressing PI3K/AKT signaling in glioma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroreport (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/WNR.0000000000001022"}], "href": "https://doi.org/10.1097/WNR.0000000000001022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29621055"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29621055"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Yanhua Wang, Tianyou Luo "}, {"type": "b", "children": [{"type": "t", "text": "LINC00673 rs11655237 Polymorphism Is Associated With Increased Risk of Cervical Cancer in a Chinese Population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Control (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1073274818803942"}], "href": "https://doi.org/10.1177/1073274818803942"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30286619"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30286619"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Na Li, Zhigang Cui, Dayang Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of LINC00673 rs11655237 polymorphism with cancer susceptibility: A meta-analysis based on 23,478 subjects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2020.07.015"}], "href": "https://doi.org/10.1016/j.ygeno.2020.07.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32650095"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32650095"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Xiaofeng Gao, Wei Jia, Jinhong Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Investigation of association between LINC00673 rs11655237 C>T and Wilms tumor susceptibility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Lab Anal (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcla.22930"}], "href": "https://doi.org/10.1002/jcla.22930"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31257678"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31257678"}]}]}]}
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| Synonyms | LUCAIR1, HILNC75, SLNCR, LINC00511, HI-LNC75, SLNCR1, ERRLR01 |
| NCBI Gene ID | 100499467 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00673 has 289 functional associations with biological entities spanning 5 categories (organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.
Click the + buttons to view associations for LINC00673 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00673 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00673 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00673 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00673 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00673 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00673 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00673 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with LINC00673 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00673 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00673 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00673 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00673 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |