LINC00676 Gene

Name long intergenic non-protein coding RNA 676
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Studies exploring genetic risk in cancer have highlighted the potential importance of long noncoding RNAs, including LINC00676. In a genome‐wide association meta‐analysis of prostate cancer in men of African ancestry, a risk signal on chromosome 13q34 was identified in a region situated 5′ of the IRS2 gene and 3′ of a long noncoding RNA—likely corresponding to LINC00676—which suggests a possible regulatory role in modulating gene expression associated with prostate cancer predisposition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although that study did not experimentally define the function of LINC00676, its proximity to a cancer risk locus implies that it may be involved in the molecular mechanisms underlying disease susceptibility. In a separate study investigating lung adenocarcinoma, a comprehensive analysis of DNA methylation–driven lncRNAs and mRNAs was conducted to identify prognostic biomarkers; however, LINC00676 was not among the lncRNAs that showed significant survival associations in this context."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Together, these findings suggest that while lncRNAs play critical roles in cancer biology, the current evidence for LINC00676 points to a function primarily inferred from its genomic location near a prostate cancer risk signal, emphasizing the need for further research to elucidate its precise biological role.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "David V Conti, Kan Wang, Xin Sheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Two Novel Susceptibility Loci for Prostate Cancer in Men of African Ancestry."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Natl Cancer Inst (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jnci/djx084"}], "href": "https://doi.org/10.1093/jnci/djx084"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29117387"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29117387"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rui Li, Yi-E Yang, Yun-Hong Yin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Methylation and transcriptome analysis reveal lung adenocarcinoma-specific diagnostic biomarkers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-019-2068-z"}], "href": "https://doi.org/10.1186/s12967-019-2068-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31558162"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31558162"}]}]}]}
NCBI Gene ID 101409253
API
Download Associations
Predicted Functions View LINC00676's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00676's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00676's ARCHS4 Predicted Functions.

Functional Associations

LINC00676 has 5 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 2 datasets.

Click the + buttons to view associations for LINC00676 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00676 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00676 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.