| Name | long intergenic non-protein coding RNA 681 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies provided offers wide‐ranging insights into neuronal transport and its critical regulators. For example, research has detailed how activity‐dependent mechanisms control axonal mitochondrial immobilization by motor–docking proteins (such as SNPH) and have revealed the importance of kinesin motors like KIF5A in facilitating anterograde transport of diverse neuronal cargoes—including neurofilaments, mitochondria, and synaptic proteins—which is essential for neuronal development and maintenance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies in the set further elucidate how disruptions in kinesin function (for example, through mutations in KIF5A leading to defective cargo binding, increased motor activity, or aggregation) contribute to neurodegenerative phenotypes such as hereditary spastic paraplegia, amyotrophic lateral sclerosis, and impaired recovery after neuronal injury. In addition, defects in axonal transport affect critical processes such as autophagic clearance and synaptic cargo delivery (e.g., PSD-95 and gephyrin complexes), thereby undermining neuronal connectivity and function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIt is important to note that while these abstracts extensively characterize the fundamental role of kinesin motors and their interacting proteins in neuronal and synaptic function—including implications for mitochondrial dynamics, autophagic flux, and neurodegeneration—none of the studies provide any information regarding the long noncoding RNA LINC00681. Thus, from the available literature presented here, no functional role for LINC00681 in neuronal transport or related cellular processes can be discerned."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Atsuko Uchida, Nael H Alami, Anthony Brown "}, {"type": "b", "children": [{"type": "t", "text": "Tight functional coupling of kinesin-1A and dynein motors in the bidirectional transport of neurofilaments."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e09-04-0304"}], "href": "https://doi.org/10.1091/mbc.e09-04-0304"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19812246"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19812246"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhengsheng Li, Megan K Mulligan, Xusheng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A transposon in Comt generates mRNA variants and causes widespread expression and behavioral differences among mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0012181"}], "href": "https://doi.org/10.1371/journal.pone.0012181"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20808911"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20808911"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kathrin N Karle, Diana Möckel, Evan Reid, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Axonal transport deficit in a KIF5A( -/- ) mouse model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurogenetics (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10048-012-0324-y"}], "href": "https://doi.org/10.1007/s10048-012-0324-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22466687"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22466687"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yanmin Chen, Zu-Hang Sheng "}, {"type": "b", "children": [{"type": "t", "text": "Kinesin-1-syntaphilin coupling mediates activity-dependent regulation of axonal mitochondrial transport."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.201302040"}], "href": "https://doi.org/10.1083/jcb.201302040"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23857772"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23857772"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Louisa Rathgeber, Kira V Gromova, Irina Schaefer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "GSK3 and KIF5 regulate activity-dependent sorting of gephyrin between axons and dendrites."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Cell Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejcb.2015.01.005"}], "href": "https://doi.org/10.1016/j.ejcb.2015.01.005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25701174"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25701174"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Takeshi Seno, Tatsuki Ikeno, Kousuke Mennya, et al. 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| NCBI Gene ID | 101409254 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00681 has 18 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.
Click the + buttons to view associations for LINC00681 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00681 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00681 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00681 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00681 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |