| HGNC Family | Pseudoautosomal regions |
| Name | long intergenic non-protein coding RNA 685 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n After careful review of the provided abstracts"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": ",\n there is no mention or reference to LINC00685 in any of these studies. As such, none of these abstracts provide specific information regarding the function, regulation, or biological role of LINC00685.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, based on the currently provided literature, the function of LINC00685 cannot be determined. If further insights or direct studies on LINC00685 become available, they will be necessary to elucidate its potential roles in functional genomics, disease processes, or regulatory networks.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Geng Chen, Ruiyuan Li, Leming Shi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Revealing the missing expressed genes beyond the human reference genome by RNA-Seq."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2164-12-590"}], "href": "https://doi.org/10.1186/1471-2164-12-590"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22133125"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22133125"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sathish Kumar Natarajan, Joseph M Pachunka, Justin L Mott "}, {"type": "b", "children": [{"type": "t", "text": "Role of microRNAs in Alcohol-Induced Multi-Organ Injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomolecules (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/biom5043309"}], "href": "https://doi.org/10.3390/biom5043309"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26610589"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26610589"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Pamela Magini, Monica Poscente, Simona Ferrari, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cytogenetic and molecular characterization of a recombinant X chromosome in a family with a severe neurologic phenotype and macular degeneration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cytogenet (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13039-015-0164-1"}], "href": "https://doi.org/10.1186/s13039-015-0164-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26236399"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26236399"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Stephanie Weng, Samuel A Stoner, Dong-Er Zhang "}, {"type": "b", "children": [{"type": "t", "text": "Sex chromosome loss and the pseudoautosomal region genes in hematological malignancies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.12050"}], "href": "https://doi.org/10.18632/oncotarget.12050"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27655702"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27655702"}]}]}]}
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| Synonyms | CXYORF10, PPP2R3B-AS1, NCRNA00107 |
| NCBI Gene ID | 283981 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00685 has 1,208 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.
Click the + buttons to view associations for LINC00685 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00685 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00685 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00685 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00685 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00685 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00685 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing LINC00685 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00685 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00685 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00685 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00685 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00685 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00685 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00685 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00685 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
