| Name | long intergenic non-protein coding RNA 705 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00705 is a long non‐coding RNA (lncRNA) identified in breast invasive carcinoma that appears to have prognostic significance. In a large TCGA breast cancer study, increased expression of LINC00705—along with several other lncRNAs—was found to be associated with tumor recurrence, suggesting that its upregulation may be indicative of a more aggressive disease course."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although the precise cellular functions of LINC00705 were not directly characterized in this study, its inclusion as part of a recurrence‐predictive signature places it among lncRNAs with potential roles in oncogenic processes. This observation is consistent with broader transcriptomic analyses that have unveiled thousands of dysregulated lncRNAs in breast cancer, many of which contribute to critical aspects of tumor biology including cell proliferation, molecular subtype discrimination, and chemoresistance"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ";."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Furthermore, while other studies have explored lncRNAs in diverse contexts such as genetic regulation via cis‐regulatory modules (which may underlie differential gene expression patterns)"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "and even psychiatric disorders"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ", the data support a model in which LINC00705, as part of the oncogenic lncRNA network, has potential utility as a prognostic biomarker and possibly as a component of regulatory pathways that drive breast cancer progression. \n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hairong Liu, Juan Li, Pratirodh Koirala, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNAs as prognostic markers in human breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.7828"}], "href": "https://doi.org/10.18632/oncotarget.7828"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26942882"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26942882"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Andrew J Warburton, David N Boone "}, {"type": "b", "children": [{"type": "t", "text": "Insights from Global Analyses of Long Noncoding RNAs in Breast Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Pathobiol Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s40139-017-0122-1"}], "href": "https://doi.org/10.1007/s40139-017-0122-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28616363"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28616363"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yudong Li, Baoxiao Wang, Hongna Lai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA CRALA is associated with poor response to chemotherapy in primary breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Thorac Cancer (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/1759-7714.12487"}], "href": "https://doi.org/10.1111/1759-7714.12487"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28834648"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28834648"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Joanna Mitchelmore, Nastasiya F Grinberg, Chris Wallace, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional effects of variation in transcription factor binding highlight long-range gene regulation by epromoters."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkaa123"}], "href": "https://doi.org/10.1093/nar/gkaa123"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32112106"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32112106"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "David M Howard, Lynsey S Hall, Jonathan D Hafferty, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Transl Psychiatry (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41398-017-0010-9"}], "href": "https://doi.org/10.1038/s41398-017-0010-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29187746"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29187746"}]}]}]}
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| NCBI Gene ID | 338588 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00705 has 174 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for LINC00705 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00705 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00705 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00705 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00705 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| HuBMAP Azimuth Cell Type Annotations | cell types associated with LINC00705 gene from the HuBMAP Azimuth Cell Type Annotations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00705 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00705 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00705 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |