LINC00839 Gene

Name long intergenic non-protein coding RNA 839
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00839 is an emerging long noncoding RNA that has been found to play multifaceted, predominantly oncogenic roles in a range of disorders. In hepatocellular carcinoma, LINC00839 is upregulated and functions as a competing endogenous RNA (ceRNA) by sponging miR‑144‑3p, which in turn leads to enhanced expression of WTAP and promotes cell proliferation, migration, invasion, and resistance to apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In acute myeloid leukemia, its expression is incorporated into prognostic models, indicating its potential as a risk marker"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", while dysregulated levels have also been noted in the context of childhood obesity, where it is identified as a key RNA in ceRNA networks, although its mechanistic role remains to be fully elucidated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In lung cancer, overexpression of LINC00839 contributes to tumor progression by sponging miR‑519d‑3p, thereby upregulating JMJD6 and enhancing cell viability, invasion, and migration with concomitant inhibition of apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Similarly, in acute lung injury models, LINC00839 is negatively regulated by sevoflurane; its overexpression normally promotes inflammation and pyroptosis through the miR‑223/NLRP3 axis, suggesting that its downregulation is protective."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In neuroblastoma, elevated LINC00839 levels correlate with poor survival outcomes; mechanistic studies indicate that it enhances glycolysis, proliferation, migration, and invasion by modulating the miR‑338‑3p/GLUT1 axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Its prognostic relevance is further underscored by its incorporation into lncRNA signatures in other cancer types such as nasopharyngeal carcinoma, where deletion of LINC00839 suppresses rapid growth, invasive capacity, and epithelial–mesenchymal transition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In breast cancer, LINC00839 is upregulated in chemoresistant cells and tissues, with its transcription activated by Myc. It contributes to enhanced proliferation, invasion, migration, and paclitaxel resistance by interacting with Lin28B and activating the PI3K/AKT signaling pathway, thereby forming a positive feedback loop with Myc."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Moreover, in the context of viral oncogenesis, LINC00839 is among a subset of host long noncoding RNAs bound by the Kaposi’s sarcoma‐associated herpesvirus ORF57 protein, implicating it in cell growth regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies highlight that LINC00839 acts as a pivotal regulatory hub—predominantly through its role as a miRNA sponge—that modulates downstream effectors involved in cell proliferation, migration, invasion, apoptosis, and inflammatory responses across diverse pathologies. Its dysregulation suggests potential utility as both a prognostic biomarker and a therapeutic target in various diseases.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xingqin Zhou, Yazhou Chang, Lirong Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00839/miR-144-3p/WTAP (WT1 Associated protein) axis is involved in regulating hepatocellular carcinoma progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1990578"}], "href": "https://doi.org/10.1080/21655979.2021.1990578"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34634995"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34634995"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chao Guo, Qian-Qian Ju, Chun-Xia Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of HOXA10 is associated with unfavorable prognosis of acute myeloid leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-020-07088-6"}], "href": "https://doi.org/10.1186/s12885-020-07088-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32571260"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32571260"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Rui Chen, Guangda Xin, Xiaofei Zhang "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA HCP5 serves as a ceRNA sponging miR-17-5p and miR-27a/b to regulate the pathogenesis of childhood obesity via the MAPK signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Pediatr Endocrinol Metab (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1515/jpem-2018-0432"}], "href": "https://doi.org/10.1515/jpem-2018-0432"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31622249"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31622249"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiaoyan Yu, Yifei Jiang, Xun Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00839/miR-519d-3p/JMJD6 axis modulated cell viability, apoptosis, migration and invasiveness of lung cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Folia Histochem Cytobiol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.5603/FHC.a2021.0022"}], "href": "https://doi.org/10.5603/FHC.a2021.0022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34734406"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34734406"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhiling Fu, Xiuying Wu, Fushuang Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sevoflurane anesthesia ameliorates LPS-induced acute lung injury (ALI) by modulating a novel LncRNA LINC00839/miR-223/NLRP3 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Pulm Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12890-022-01957-5"}], "href": "https://doi.org/10.1186/s12890-022-01957-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35473680"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35473680"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Lixia Yang, Liangyan Pei, Jilong Yi "}, {"type": "b", "children": [{"type": "t", "text": "LINC00839 Regulates Proliferation, Migration, Invasion, Apoptosis and Glycolysis in Neuroblastoma Cells Through miR-338-3p/GLUT1 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuropsychiatr Dis Treat (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/NDT.S309467"}], "href": "https://doi.org/10.2147/NDT.S309467"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34188473"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34188473"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Feng Ying Zhang, Xia Li, Ting Ting Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00839 knockdown restrains the metastatic behavior of nasopharyngeal carcinoma by sponging miR-454-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.203792"}], "href": "https://doi.org/10.18632/aging.203792"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34965215"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34965215"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Qi Chen, Huiling Shen, Xiaolan Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A nuclear lncRNA Linc00839 as a Myc target to promote breast cancer chemoresistance via PI3K/AKT signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cas.14555"}], "href": "https://doi.org/10.1111/cas.14555"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32619088"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32619088"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Beatriz Alvarado-Hernandez, Yanping Ma, Nishi R Sharma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Protein-RNA Interactome Analysis Reveals Wide Association of Kaposi's Sarcoma-Associated Herpesvirus ORF57 with Host Noncoding RNAs and Polysomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Virol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/JVI.01782-21"}], "href": "https://doi.org/10.1128/JVI.01782-21"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34787459"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34787459"}]}]}]}
NCBI Gene ID 84856
API
Download Associations
Predicted Functions View LINC00839's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00839's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00839's ARCHS4 Predicted Functions.

Functional Associations

LINC00839 has 928 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for LINC00839 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00839 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00839 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00839 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00839 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00839 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00839 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00839 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00839 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00839 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00839 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00839 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00839 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00839 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00839 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00839 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.