LINC00840 Gene

Name long intergenic non-protein coding RNA 840
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have suggested that LINC00840, a long non‐coding RNA, may play an important role in both cancer prognosis and epigenetic regulation. In one investigation, an improved survival analysis method that integrated gene interaction information into a Reweighted Random Survival Forest (RRSF) model identified a prognostic signature composed of two coding genes and three lncRNAs – among which LINC00840 was included – in patients with glioblastoma multiforme and esophageal squamous cell carcinoma. This finding implies that LINC00840 might influence tumor progression and patient survival through its participation in mRNA–lncRNA co‐expression networks that are biologically relevant to tumor development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a separate study focused on epigenome‐wide associations, differential DNA methylation patterns were examined in relation to early-life nutritional exposures such as breastfeeding. Although the report was truncated regarding the specific differentially methylated positions, the overall findings raise the possibility that LINC00840 could be subject to epigenetic modifications that may alter its expression profile over time in response to environmental factors. Such epigenetic regulation further supports the notion that LINC00840 may have long-term implications for gene expression and disease susceptibility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wei Wang, Wei Liu "}, {"type": "b", "children": [{"type": "t", "text": "Integration of gene interaction information into a reweighted random survival forest approach for accurate survival prediction and survival biomarker discovery."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-31497-0"}], "href": "https://doi.org/10.1038/s41598-018-31497-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30181543"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30181543"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "William B Sherwood, Dilini M Kothalawala, Latha Kadalayil, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Epigenome-Wide Association Study Reveals Duration of Breastfeeding Is Associated with Epigenetic Differences in Children."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Environ Res Public Health (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijerph17103569"}], "href": "https://doi.org/10.3390/ijerph17103569"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32443666"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32443666"}]}]}]}
NCBI Gene ID 100506835
API
Download Associations
Predicted Functions View LINC00840's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00840's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00840's ARCHS4 Predicted Functions.

Functional Associations

LINC00840 has 798 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for LINC00840 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00840 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00840 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00840 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00840 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with LINC00840 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00840 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00840 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00840 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.