LINC00841 Gene

Name long intergenic non-protein coding RNA 841
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although none of the provided abstracts explicitly mention LINC00841, they do describe functions for long noncoding RNAs and other loci in diverse biological contexts that may provide insight into the kinds of roles such RNAs can play. For example, Abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "characterizes differential transcriptomic responses between in vitro microfold (M) cells and Caco‑2 cells during Salmonella Typhimurium infection. In this study, several noncoding RNAs were found to be differentially expressed between these cell types, suggesting that long noncoding RNAs (of which LINC00841 is a member) might be involved in modulating host immune responses and cellular phenotypes. In contrast, Abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "focuses on the genetic underpinnings of attention function in childhood, while Abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "describes a genomic and epigenomic biomarker panel for predicting coronary heart disease risk. Although these later studies do not directly address LINC00841 or the broader category of long noncoding RNAs, they do highlight the significance of integrating noncoding genomic information to understand complex traits and disease risks.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, while the specific function of LINC00841 is not delineated in these abstracts, its inclusion in the broader group of long noncoding RNAs—as highlighted in the context of immune modulation in M cells (1)—suggests it may have a regulatory role comparable to other noncoding transcripts. These roles can potentially extend to modulating responses in immune, neurological, or cardiovascular systems, although direct functional evidence for LINC00841 remains to be established.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ke-Chuan Wang, Chih-Hung Huang, Ching-Jou Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Impacts of Salmonella enterica Serovar Typhimurium and Its speG Gene on the Transcriptomes of In Vitro M Cells and Caco-2 Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0153444"}], "href": "https://doi.org/10.1371/journal.pone.0153444"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27064787"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27064787"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Silvia Alemany, Natàlia Vilor-Tejedor, Mariona Bustamante, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Genome-Wide Association Study of Attention Function in a Population-Based Sample of Children."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0163048"}], "href": "https://doi.org/10.1371/journal.pone.0163048"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27656889"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27656889"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Meeshanthini V Dogan, Steven R H Beach, Ronald L Simons, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Blood-Based Biomarkers for Predicting the Risk for Five-Year Incident Coronary Heart Disease in the Framingham Heart Study via Machine Learning."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes (Basel) (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/genes9120641"}], "href": "https://doi.org/10.3390/genes9120641"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30567402"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30567402"}]}]}]}
NCBI Gene ID 283033
API
Download Associations
Predicted Functions View LINC00841's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00841's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00841's ARCHS4 Predicted Functions.

Functional Associations

LINC00841 has 174 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for LINC00841 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00841 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00841 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00841 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00841 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00841 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00841 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00841 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00841 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00841 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.