LINC00842 Gene

Name long intergenic non-protein coding RNA 842
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLong noncoding RNAs are increasingly recognized as pivotal regulators of cancer biology, acting through diverse mechanisms. For instance, one study identified ELIT-1—a TGFβ-induced lncRNA that binds Smad3 to reinforce TGFβ/Smad signaling and promote epithelial-mesenchymal transition (EMT) in lung adenocarcinoma and gastric cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn pancreatic ductal adenocarcinoma (PDAC), LINC00842 is markedly upregulated in response to high glucose conditions via the transcription factor YY1. This long intergenic noncoding RNA binds specifically to acetylated PGC-1α and prevents its deacetylation by SIRT1. Consequently, the sustained acetylated state of PGC-1α shifts cellular metabolism from mitochondrial oxidative catabolism toward fatty acid synthesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nThe metabolic reprogramming driven by LINC00842 enhances malignant phenotypes by promoting PDAC cell growth and invasiveness, which correlates with poor patient survival. Thus, while other lncRNAs such as ELIT-1 modulate key signaling pathways like TGFβ/Smad3 to drive tumor progression, LINC00842 acts primarily through rewiring metabolic pathways, emerging as a promising therapeutic target in PDAC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Satoshi Sakai, Tatsuya Ohhata, Kyoko Kitagawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNA "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "ELIT-1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " Acts as a Smad3 Cofactor to Facilitate TGFβ/Smad Signaling and Promote Epithelial-Mesenchymal Transition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-18-3210"}], "href": "https://doi.org/10.1158/0008-5472.CAN-18-3210"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30952633"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30952633"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xudong Huang, Ling Pan, Zhixiang Zuo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00842 inactivates transcription co-regulator PGC-1α to promote pancreatic cancer malignancy through metabolic remodelling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-021-23904-4"}], "href": "https://doi.org/10.1038/s41467-021-23904-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34158490"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34158490"}]}]}]}
NCBI Gene ID 643650
API
Download Associations
Predicted Functions View LINC00842's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00842's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00842's ARCHS4 Predicted Functions.

Functional Associations

LINC00842 has 792 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LINC00842 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00842 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00842 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00842 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00842 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00842 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00842 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with LINC00842 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00842 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00842 protein from the LOCATE Predicted Protein Localization Annotations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00842 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.