LINC00853 Gene

HGNC Family Non-coding RNAs
Name long intergenic non-protein coding RNA 853
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have begun to delineate a context‐dependent role for the long noncoding RNA LINC00853 in cancer. In hepatocellular carcinoma (HCC), LINC00853 was identified among several upregulated lncRNAs and—uniquely when measured in small extracellular vesicles—displayed a marked increase in patient samples. Notably, extracellular vesicle–derived LINC00853 exhibited excellent diagnostic performance for all-stage HCC, suggesting it may serve as a promising noninvasive biomarker in this malignancy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In contrast, in T cell acute lymphoblastic leukemia (T-ALL), LINC00853 was found to be downregulated and inversely correlated with the expression of the chemokine receptor CCR9. Functional studies in T-ALL cell lines revealed that LINC00853 suppresses cell migration and invasion, thereby restraining leukemic infiltration into multiple organs. This evidence positions LINC00853 as a potential tumor suppressor in the context of leukemic dissemination."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, broader investigations into lncRNA biology have highlighted diverse mechanisms—such as enhancer-like activity, chromosomal looping, and RNA-mediated recruitment of protein effectors—in regulating gene expression and cellular differentiation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "6"}]}, {"type": "t", "text": " Although these studies do not address LINC00853 directly, they underscore the potential for lncRNAs—including LINC00853—to engage in regulatory activities in a tissue-specific manner.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Soon Sun Kim, Geum Ok Baek, Hye Ri Ahn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Serum small extracellular vesicle-derived LINC00853 as a novel diagnostic marker for early hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/1878-0261.12745"}], "href": "https://doi.org/10.1002/1878-0261.12745"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32525601"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32525601"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jingyuan Li, Jamal Muhammad, Tian Xie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00853 restrains T cell acute lymphoblastic leukemia invasion and infiltration by regulating CCR9/CCL25."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Immunol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molimm.2021.10.016"}], "href": "https://doi.org/10.1016/j.molimm.2021.10.016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34808497"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34808497"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Johnny T Y Kung, Jeannie T Lee "}, {"type": "b", "children": [{"type": "t", "text": "RNA in the loop."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Cell (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.devcel.2013.03.009"}], "href": "https://doi.org/10.1016/j.devcel.2013.03.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23537627"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23537627"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ulf Andersson Ørom, Thomas Derrien, Malte Beringer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNAs with enhancer-like function in human cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2010.09.001"}], "href": "https://doi.org/10.1016/j.cell.2010.09.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20887892"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20887892"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Dubravka Vučićević, Olivia Corradin, Evgenia Ntini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long ncRNA expression associates with tissue-specific enhancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/15384101.2014.977641"}], "href": "https://doi.org/10.4161/15384101.2014.977641"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25607649"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25607649"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Denise Thiel, Nataša Djurdjevac Conrad, Evgenia Ntini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Bioinformatics (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12859-019-2900-8"}], "href": "https://doi.org/10.1186/s12859-019-2900-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31142264"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31142264"}]}]}]}
Synonyms NCRNA-A4, PDZK1IP1-AS1
NCBI Gene ID 100874253
API
Download Associations
Predicted Functions View LINC00853's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00853's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00853's ARCHS4 Predicted Functions.

Functional Associations

LINC00853 has 801 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for LINC00853 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00853 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00853 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00853 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00853 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00853 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00853 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00853 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.