| Name | long intergenic non-protein coding RNA 865 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Emerging evidence from recent studies highlights the potential utility of LINC00865 as a prognostic biomarker in cancer. In gastric cancer, a ferroptosis‐related lncRNA risk model was established that incorporated LINC00865 along with five other lncRNAs; this model successfully stratified patients into high‐ and low‐risk groups and was associated with several signaling pathways involved in tumor progression and immune cell infiltration (2). In a separate study focusing on advanced renal cell carcinoma, LINC00865 was one component of a nine‐lncRNA signature that predicted poorer overall survival in patients with stage IV, high‐grade tumors; pathway enrichment analyses suggested that these lncRNAs, including LINC00865, may be involved in the regulation of cell division, cell cycle processes, DNA damage responses, and cytokine modulation (3). Although a study of inflammatory responses through endotoxin challenge analyzed tissue‐specific lincRNA profiles in innate immunity (1), LINC00865 was not specifically highlighted in that context. Collectively, the findings from the cancer studies indicate that LINC00865 holds promise as a biomarker for oncologic outcomes and may participate in key regulatory processes within tumor biology (2,3)."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jane F Ferguson, Chenyi Xue, Yuanfeng Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tissue-Specific Differential Expression of Novel Genes and Long Intergenic Noncoding RNAs in Humans With Extreme Response to Evoked Endotoxemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Genom Precis Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCGEN.117.001907"}], "href": "https://doi.org/10.1161/CIRCGEN.117.001907"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30571184"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30571184"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Qingfang Yue, Jun Bai, Fei Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel classification and risk model based on ferroptosis-related lncRNAs to predict oncologic outcomes for gastric cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biochem Mol Toxicol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jbt.23052"}], "href": "https://doi.org/10.1002/jbt.23052"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35315178"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35315178"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ning Li, Haiying Zhang, Keyao Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel long non-coding RNA-based prognostic signature for renal cell carcinoma patients with stage IV and histological grade G4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1971022"}], "href": "https://doi.org/10.1080/21655979.2021.1971022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34499010"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34499010"}]}]}]}
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| NCBI Gene ID | 643529 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00865 has 706 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.
Click the + buttons to view associations for LINC00865 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of LINC00865 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00865 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00865 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00865 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00865 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00865 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00865 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00865 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00865 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00865 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00865 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00865 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |