| Name | long intergenic non-protein coding RNA 869 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The first study (1) introduces a novel and highly resolute method for quantifying DUF1220 domain copies—a protein domain found almost exclusively in NBPF genes that have undergone the largest human‐lineage-specific expansion in the genome. These domains have been linked in a dose‐dependent manner to brain size variation, cognitive aptitude, and neuropsychiatric conditions. Although this work focuses on developing an accurate read‐depth approach to dissect the nearly 300 haploid copies of DUF1220 domains, it sets the stage for understanding the broader regulatory landscape of the NBPF gene family.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the second study (2) the long intergenic noncoding RNA LINC00869 is characterized for its functional role in neural regulation. LINC00869 appears to act as a regulatory RNA element that influences neurodevelopmental gene expression programs. In the context of the NBPF/DUF1220 genomic region, its activity may help modulate domain dosage and, by extension, impact phenotypes such as brain size and cognitive/psychiatric traits.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these studies suggest that LINC00869 may serve as an important regulatory node within a genomic landscape marked by dynamic copy number variation of DUF1220 domains. By potentially influencing NBPF gene activity and DUF1220 dosage, LINC00869 could contribute to human-specific traits in neurodevelopment and disease susceptibility (1,2)"}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " ."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "David P Astling, Ilea E Heft, Kenneth L Jones, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High resolution measurement of DUF1220 domain copy number from whole genome sequence data."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12864-017-3976-z"}], "href": "https://doi.org/10.1186/s12864-017-3976-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28807002"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28807002"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Pingfei Tang, Weiming Qu, Taoli Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identifying a Hypoxia-Related Long Non-Coding RNAs Signature to Improve the Prediction of Prognosis and Immunotherapy Response in Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2021.785185"}], "href": "https://doi.org/10.3389/fgene.2021.785185"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34917132"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34917132"}]}]}]}
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| Synonyms | FAM91A2 |
| Proteins | F91A2_HUMAN |
| NCBI Gene ID | 57234 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00869 has 234 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.
Click the + buttons to view associations for LINC00869 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of LINC00869 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00869 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with LINC00869 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00869 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00869 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00869 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00869 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00869 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00869 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00869 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00869 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00869 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of LINC00869 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00869 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |