LINC00871 Gene

Name long intergenic non-protein coding RNA 871
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The long intergenic non‐coding RNA LINC00871—identified as part of the MIS18BP1/LINC00871 locus—was recently discovered in a genome‐wide association study of shoulder impingement and rotator cuff tears."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although its precise biological function was not elaborated upon in the study, the genetic association of this locus with rotator cuff disease suggests that LINC00871 may play a regulatory role in gene expression pathways relevant to tendon integrity, repair, and overall musculoskeletal health. This finding highlights the potential involvement of long non‐coding RNAs in modulating tissue structure and the pathologic processes underlying rotator cuff pathology, thereby supporting further investigation into its mechanistic contributions, as well as its possible utility as a biomarker for disease risk and a target for personalized therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Stuart K Kim, Condor Nguyen, Kevin B Jones, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A genome-wide association study for shoulder impingement and rotator cuff disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Shoulder Elbow Surg (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jse.2020.11.025"}], "href": "https://doi.org/10.1016/j.jse.2020.11.025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33482370"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33482370"}]}]}]}
NCBI Gene ID 100506412
API
Download Associations
Predicted Functions View LINC00871's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00871's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00871's ARCHS4 Predicted Functions.

Functional Associations

LINC00871 has 124 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.

Click the + buttons to view associations for LINC00871 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00871 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00871 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00871 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00871 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.