LINC00886 Gene

Name long intergenic non-protein coding RNA 886
Summary
{"type": "root", "children": [{"type": "t", "text": "<head>\n <meta charset=\"UTF-8\">\n <title>LINC00886 Function Summary</title>\n </head>\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n LINC00886 has been demonstrated to function as a tumor suppressor in laryngeal squamous cell carcinoma (LSCC). In LSCC, LINC00886 is significantly downregulated due to aberrant methylation of its promoter region, and this epigenetic silencing is associated with higher pathological grade. Restoration of LINC00886 expression leads to dramatic inhibition of cell proliferation, migration, and invasion in vitro as well as suppressed tumor growth in vivo. The antitumor effect of LINC00886 appears to be linked with its regulation of key oncogenic signaling pathways such as VEGFA/PI3K/AKT and the epithelial-mesenchymal transition (EMT) process."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n While the direct role of LINC00886 was specifically characterized in LSCC, the broader context of long noncoding RNAs (lncRNAs) in cancer is further supported by studies in non‐small cell lung cancer and breast cancer. For instance, the profiling of lncRNA expression changes in response to targeted treatments in non‐small cell lung cancer highlights the potential of lncRNAs to modulate key cellular pathways relevant to tumor behavior"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", and genome‐wide association studies in breast cancer further emphasize the clinical and biological significance of noncoding regions in cancer susceptibility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Additional findings consolidate the emerging view that lncRNAs have profound impacts on tumorigenesis and may serve as promising biomarkers and therapeutic targets."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Overall, the evidence suggests that LINC00886, through its epigenetically regulated expression and interaction with key signaling and EMT pathways, holds promise not only as a biomarker for LSCC but also as a potential target for novel therapeutic strategies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lili Lan, Huan Cao, Weiwei Chi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Aberrant DNA hypermethylation-silenced LINC00886 gene accelerates malignant progression of laryngeal carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Res Pract (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.prp.2020.152877"}], "href": "https://doi.org/10.1016/j.prp.2020.152877"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32111441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32111441"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Haixiang Yu, Zhifeng Han, Zhenan Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RNA sequencing uncovers the key long non-coding RNAs and potential molecular mechanism contributing to XAV939-mediated inhibition of non-small cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.10191"}], "href": "https://doi.org/10.3892/ol.2019.10191"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31186710"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31186710"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiang Shu, Jirong Long, Qiuyin Cai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-020-15046-w"}], "href": "https://doi.org/10.1038/s41467-020-15046-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32139696"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32139696"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yikang He, Yangfan Ye, Wei Tian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel lncRNA Panel Related to Ferroptosis, Tumor Progression, and Microenvironment is a Robust Prognostic Indicator for Glioma Patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Cell Dev Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fcell.2021.788451"}], "href": "https://doi.org/10.3389/fcell.2021.788451"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34950662"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34950662"}]}]}]}
NCBI Gene ID 730091
API
Download Associations
Predicted Functions View LINC00886's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00886's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00886's ARCHS4 Predicted Functions.

Functional Associations

LINC00886 has 736 functional associations with biological entities spanning 4 categories (chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for LINC00886 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00886 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00886 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00886 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00886 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00886 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00886 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00886 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00886 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00886 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00886 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00886 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00886 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00886 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00886 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.