LINC00892 Gene

Name long intergenic non-protein coding RNA 892
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have identified the long non‐coding RNA LINC00892 as a component of multiple prognostic signatures associated with tumor immune infiltration, microenvironment regulation, and hypoxic response in cancer. In non‐small cell lung cancer, LINC00892 was among a set of lncRNAs that helped stratify patients based on immune cell infiltration, thereby indirectly linking its expression to improved clinical outcomes and potentially to a more favorable response to immunotherapy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In bladder cancer, LINC00892 has been included in risk score models based on tumor microenvironment‐associated lncRNAs, where its negative coefficient suggests that higher expression may be protective and associated with less aggressive disease progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, LINC00892 has been identified as one of four hypoxia‐related lncRNAs that contribute to a molecular subtype predictive of patient prognosis, correlating with variations in immune checkpoint expression and chemotherapeutic sensitivity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Additional work exploring immune-related lncRNA signatures in bladder cancer further supports the notion that LINC00892 is a promising immuno-biomarker that may improve risk stratification and help predict responses to immunotherapy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings suggest that while the precise mechanistic role of LINC00892 remains to be fully elucidated, its inclusion in various prognostic models underscores its potential in modulating the tumor immune microenvironment. Consequently, LINC00892 may serve as a valuable predictive marker to guide personalized cancer therapies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jie Sun, Zicheng Zhang, Siqi Bao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of tumor immune infiltration-associated lncRNAs for improving prognosis and immunotherapy response of patients with non-small cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunother Cancer (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/jitc-2019-000110"}], "href": "https://doi.org/10.1136/jitc-2019-000110"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32041817"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32041817"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Gaoteng Lin, Baoyin Guo, Yulei Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Impact of Long Non-coding RNAs Associated With Microenvironment on Survival for Bladder Cancer Patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2020.567200"}], "href": "https://doi.org/10.3389/fgene.2020.567200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33281872"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33281872"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xianwu Chen, Yan Zhang, Feifan Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel Assessment Model Based on Molecular Subtypes of Hypoxia-Related LncRNAs for Prognosis of Bladder Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Cell Dev Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fcell.2021.718991"}], "href": "https://doi.org/10.3389/fcell.2021.718991"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34869309"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34869309"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yucai Wu, Lei Zhang, Shiming He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of immune-related LncRNA for predicting prognosis and immunotherapeutic response in bladder cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.104115"}], "href": "https://doi.org/10.18632/aging.104115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33221763"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33221763"}]}]}]}
NCBI Gene ID 100128420
API
Download Associations
Predicted Functions View LINC00892's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00892's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00892's ARCHS4 Predicted Functions.

Functional Associations

LINC00892 has 370 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for LINC00892 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00892 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00892 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00892 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00892 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00892 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00892 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00892 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00892 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00892 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.