| Name | long intergenic non-protein coding RNA 894 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00894 has been implicated in cancer through distinct molecular mechanisms. In kidney renal papillary cell carcinoma (KIRP) and lung adenocarcinoma (LUAD), LINC00894 is part of a competitive endogenous RNA (ceRNA) network that includes MMP25‐AS1, SNHG1, LINC02298, and MIR193BHG, which functions to sponge miR‑140‑3p and thereby modulate the expression of GPRIN1. This regulatory axis is associated with an increased expression of GPRIN1, altered tumor immune cell infiltration, and poor clinical outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the context of breast cancer, particularly in estrogen receptor‐positive cases undergoing tamoxifen treatment, an isoform designated LINC00894‑002 is found to be downregulated in tamoxifen‑resistant (TamR) cells. Directly upregulated by ERα, LINC00894‑002 normally acts to maintain the levels of miR‑200a‑3p and miR‑200b‑3p. Its loss leads to the upregulation of TGF‑β2 and ZEB1, resulting in enhanced tamoxifen resistance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although additional studies have highlighted the regulatory roles of long non‑coding RNAs in tumorigenesis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "and provided further insights into lncRNA network complexity"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", the findings described above underscore that LINC00894 functions in a context‑dependent manner. It participates in oncogenic ceRNA mechanisms in certain carcinomas while acting as an inhibitor of drug resistance in breast cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qiwei Zhou, Diangeng Li, Hongying Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel lncRNA-miRNA-mRNA competing endogenous RNA regulatory network in lung adenocarcinoma and kidney renal papillary cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Thorac Cancer (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/1759-7714.14129"}], "href": "https://doi.org/10.1111/1759-7714.14129"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34453499"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34453499"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiulei Zhang, Meiting Wang, Huihui Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of LINC00894-002 Contributes to Tamoxifen Resistance by Enhancing the TGF-β Signaling Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochemistry (Mosc) (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1134/S0006297918050139"}], "href": "https://doi.org/10.1134/S0006297918050139"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29738694"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29738694"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "De-Feng Meng, Hua Shao, Chuan-Bo Feng "}, {"type": "b", "children": [{"type": "t", "text": "LINC00894 Enhances the Progression of Breast Cancer by Sponging miR-429 to Regulate ZEB1 Expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S277284"}], "href": "https://doi.org/10.2147/OTT.S277284"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34079285"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34079285"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Lugang Deng, Peixi Wang, Zhi Qu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Construction and Analysis of ceRNA Network and Immune Infiltration in Kidney Renal Clear Cell Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2021.667610"}], "href": "https://doi.org/10.3389/fgene.2021.667610"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34567057"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34567057"}]}]}]}
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| NCBI Gene ID | 100272228 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00894 has 870 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for LINC00894 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00894 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of LINC00894 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00894 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00894 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00894 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00894 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00894 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00894 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00894 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00894 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00894 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00894 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00894 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |