| Name | long intergenic non-protein coding RNA 896 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00896 is a long non‐coding RNA that appears to be involved in diverse pathological settings. In the context of Chromosome 22q11.2 deletion syndrome, loss of non‐coding RNAs—including LINC00896 as part of the ~106 gene set lost—may contribute to the complex developmental and multi‐organ defects associated with the syndrome (1). In colon adenocarcinoma, LINC00896 was identified as one of a six‐lncRNA signature associated with genomic instability. Its dysregulated expression correlates with increased levels of PD-L1 and higher somatic mutation rates, suggesting that LINC00896 may serve not only as a prognostic biomarker but also as an indicator for potential sensitivity to immunotherapy (2). In lung squamous cell carcinoma, integration of transcriptomic and copy number variation data highlighted LINC00896 among several lncRNAs regulated by non‐coding genomic variations, proposing its utility as a biomarker for disease prognosis and as a candidate for further exploration in targeted therapeutic strategies (3)."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qiumei Du, M Teresa de la Morena, Nicolai S C van Oers "}, {"type": "b", "children": [{"type": "t", "text": "The Genetics and Epigenetics of 22q11.2 Deletion Syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2019.01365"}], "href": "https://doi.org/10.3389/fgene.2019.01365"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32117416"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32117416"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shujia Chen, Xiaofei Li, Jiachen Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Six mutator-derived lncRNA signature of genome instability for predicting the clinical outcome of colon cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gastrointest Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.21037/jgo-21-494"}], "href": "https://doi.org/10.21037/jgo-21-494"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34790382"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34790382"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jinfeng Ning, Fengjiao Wang, Kaibin Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterizing the Copy Number Variation of Non-Coding RNAs Reveals Potential Therapeutic Targets and Prognostic Markers of LUSC."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2021.779155"}], "href": "https://doi.org/10.3389/fgene.2021.779155"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34925461"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34925461"}]}]}]}
|
| NCBI Gene ID | 150197 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
LINC00896 has 329 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for LINC00896 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of LINC00896 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00896 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00896 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00896 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00896 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00896 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00896 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00896 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |