LINC00898 Gene

Name long intergenic non-protein coding RNA 898
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00898 appears to be one of several long non‐coding RNAs that contribute to epigenetic regulation in distinct pathological contexts. In a study of colon adenocarcinoma, lncRNAs were comprehensively profiled using a LASSO‐based approach. Within this framework, LINC00898 is implicated in the regulation of gene expression networks that can affect tumor progression and patient overall survival, supporting its potential utility in prognostic prediction of disease outcome (1). In a separate investigation focused on cryptorchidism, treatment with a gonadotropin releasing hormone agonist was shown to modulate testicular lncRNA levels. Given that certain lncRNAs interact with chromatin‐modifying enzymes to drive epigenetic changes, LINC00898 may similarly be involved in triggering the differentiation of Ad spermatogonia via an epigenetic mechanism that mimics the effects of mini‐puberty; this provides molecular insight into the observed infertility issues associated with cryptorchidism (2). Collectively, these studies highlight LINC00898 as a potential epigenetic regulator that may influence both cancer pathogenesis and the proper development of germ cells."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qiongying Zhang, Zhuo Lin, Haiyan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prediction of overall survival time in patients with colon adenocarcinoma using DNA methylation profiling of long non-coding RNAs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.11236"}], "href": "https://doi.org/10.3892/ol.2019.11236"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32002035"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32002035"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Faruk Hadziselimovic, Gilvydas Verkauskas, Beata Vincel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Testicular expression of long non-coding RNAs is affected by curative GnRHa treatment of cryptorchidism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Basic Clin Androl (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12610-019-0097-3"}], "href": "https://doi.org/10.1186/s12610-019-0097-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31890219"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31890219"}]}]}]}
NCBI Gene ID 400932
API
Download Associations
Predicted Functions View LINC00898's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00898's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00898's ARCHS4 Predicted Functions.

Functional Associations

LINC00898 has 267 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for LINC00898 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00898 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00898 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00898 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00898 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00898 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00898 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00898 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00898 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00898 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.