| Name | long intergenic non-protein coding RNA 900 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long intergenic non‐coding RNA LINC00900 has emerged as a potential regulator with diverse roles in human disease. In multiple cancer studies, LINC00900 was identified within multi‐lncRNA panels that stratify patient prognosis; for instance, its aberrant expression is one component of prognostic signatures in thyroid cancer and prostate cancer, where its levels correlate with disease stage and overall survival."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " Moreover, in gliomas, LINC00900 forms part of a nine‐EMT‐related lncRNA signature, implicating it in epithelial–mesenchymal transition processes that underlie tumor progression and patient outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond oncology, genetic analyses have linked variants in proximity to LINC00900 with metabolic alterations. One study found that a single nucleotide polymorphism near LINC00900 interacts with serum ferritin levels to modulate type 2 diabetes risk, while another reported that a nearby variant exhibits pleiotropic effects on blood pressure within metabolic syndrome traits."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Although the underlying mechanisms driving LINC00900’s regulatory functions remain to be fully elucidated, its repeated presence among prognostic panels and its association with both immune‐ and metabolism‐related pathways underscore its potential as a biomarker and therapeutic target in diverse pathological contexts.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chengang Guo, Huafang Li, Na Pan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of prognostic signature with seven LncRNAs for papillary thyroid carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Adv Med Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.advms.2021.11.001"}], "href": "https://doi.org/10.1016/j.advms.2021.11.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35121283"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35121283"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zheng Li, Hui Wang, Xia Deng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction and Validation of an Immune-Related lncRNA Prognosis Model for Thyroid Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Comb Chem High Throughput Screen (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1386207325666220223123917"}], "href": "https://doi.org/10.2174/1386207325666220223123917"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35209814"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35209814"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiaoyong Gong, Bobin Ning "}, {"type": "b", "children": [{"type": "t", "text": "Five lncRNAs Associated With Prostate Cancer Prognosis Identified by Coexpression Network Analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Technol Cancer Res Treat (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1533033820963578"}], "href": "https://doi.org/10.1177/1533033820963578"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33084528"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33084528"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chuming Tao, Haitao Luo, Luyue Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of an epithelial-mesenchymal transition related long non-coding RNA (LncRNA) signature in Glioma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1951927"}], "href": "https://doi.org/10.1080/21655979.2021.1951927"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34288803"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34288803"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jihye Kim, Hye Won Woo, Min-Ho Shin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide gene and serum ferritin interaction in the development of type 2 diabetes in adults aged 40 years or older."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nutr Metab Cardiovasc Dis (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.numecd.2021.09.028"}], "href": "https://doi.org/10.1016/j.numecd.2021.09.028"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34916119"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34916119"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jia Y Wan, Deborah L Goodman, Emileigh L Willems, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetol Metab Syndr (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13098-021-00670-3"}], "href": "https://doi.org/10.1186/s13098-021-00670-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34074324"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34074324"}]}]}]}
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| NCBI Gene ID | 283143 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00900 has 786 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.
Click the + buttons to view associations for LINC00900 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00900 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00900 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00900 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00900 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00900 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00900 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00900 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00900 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00900 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00900 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |