| Name | long intergenic non-protein coding RNA 906 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00906 is a long intergenic non‐coding RNA whose potential role in colorectal cancer (CRC) is suggested by its genomic location. In a recent genome‐wide association study of non‐hereditary CRC in a Spanish population, a novel candidate risk single nucleotide polymorphism (rs3987) was identified at 4q26 (1). Although the study did not directly investigate LINC00906, the 4q26 region in which this SNP is located may encompass regulatory elements—including LINC00906—that could modulate gene expression and, in turn, contribute to CRC susceptibility. Thus, while the functional mechanisms of LINC00906 remain to be elucidated, its proximity to a risk locus supports the hypothesis that it might be involved in the regulation of genes implicated in colorectal tumorigenesis."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Luis M Real, Agustín Ruiz, Javier Gayán, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A colorectal cancer susceptibility new variant at 4q26 in the Spanish population identified by genome-wide association analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0101178"}], "href": "https://doi.org/10.1371/journal.pone.0101178"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24978480"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24978480"}]}]}]}
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| NCBI Gene ID | 148145 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00906 has 174 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for LINC00906 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00906 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00906 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00906 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00906 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00906 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00906 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |