LINC00907 Gene

Name long intergenic non-protein coding RNA 907
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The reported study (1) reveals a novel function for the RAG recombinase (RAG1/2) wherein, in addition to its well‐characterized role in mediating V(D)J recombination for adaptive immunity, it also catalyzes aberrant insertion events that destabilize the genome. Specifically, RAG1/2 was shown to excise fragments from antibody gene regions which can then be reinserted at DNA breaks on heterologous chromosomes. These insertion events, observed in both murine primary B cells and human lymphoid malignancies, define a distinct pathway that contributes to oncogenic genomic alterations.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although the abstract does not explicitly mention or describe LINC00907, when considering its function in a broader genomic context one may hypothesize that noncoding RNAs such as LINC00907 could be of interest in future studies addressing genome stability. For example, such long noncoding RNAs might be investigated for potential regulatory roles—either in modulating the activity of factors like RAG1/2 or in influencing the genomic environment that permits such aberrant insertions. However, based on the available information in this study, no direct function or mechanistic involvement of LINC00907 is reported.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n (1)."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Philipp C Rommel, Thiago Y Oliveira, Michel C Nussenzweig, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RAG1/2 induces genomic insertions by mobilizing DNA into RAG1/2-independent breaks."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Med (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1084/jem.20161638"}], "href": "https://doi.org/10.1084/jem.20161638"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28179379"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28179379"}]}]}]}
NCBI Gene ID 284260
API
Download Associations
Predicted Functions View LINC00907's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00907's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00907's ARCHS4 Predicted Functions.

Functional Associations

LINC00907 has 944 functional associations with biological entities spanning 5 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for LINC00907 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00907 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00907 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00907 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00907 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00907 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00907 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00907 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00907 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00907 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00907 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00907 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.