| Name | long intergenic non-protein coding RNA 909 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have highlighted long non‐coding RNA LINC00909 as a multifaceted oncogenic regulator and promising biomarker in several cancer types. In colorectal cancer, for example, LINC00909 is included in circulating lncRNA panels that exhibit high diagnostic accuracy and prognostic significance, with its levels decreasing after surgical intervention and correlating with autophagy‐related signaling pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, in ovarian cancer, elevated tumor and serum levels of LINC00909 are associated with advanced staging and deteriorated patient performance, supporting its role as a non‐invasive diagnostic marker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In glioma, upregulation of LINC00909 is correlated with higher WHO grade and poorer prognosis. Functional assays indicate that LINC00909 acts as a competitive endogenous RNA (ceRNA) by sponging miR‐194, which in turn leads to the upregulation of MUC1-C and enhanced cell proliferation and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In pediatric acute myeloid leukemia, increased LINC00909 levels promote cell viability, migration, and invasion while inhibiting apoptosis by sequestering miR-625 and modulating the Wnt/β-catenin signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in pediatric acute lymphoblastic leukemia, LINC00909 emerged as a hub RNA associated with disease progression and adverse outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In locally advanced rectal cancer, overexpression of LINC00909 has been linked to increased resistance to chemoradiotherapy, underscoring its potential as a therapeutic target to improve treatment response."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings demonstrate that LINC00909 functions as an oncogene by promoting cell proliferation, invasion, and treatment resistance while serving as a promising diagnostic and prognostic biomarker across diverse malignancies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wei Xu, Gai Zhou, Huizhi Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Circulating lncRNA SNHG11 as a novel biomarker for early diagnosis and prognosis of colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Cancer (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ijc.32747"}], "href": "https://doi.org/10.1002/ijc.32747"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31633800"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31633800"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Lin Cheng, Tong Han, Zheyu Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and Validation of Six Autophagy-related Long Non-coding RNAs as Prognostic Signature in Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Med Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/ijms.49449"}], "href": "https://doi.org/10.7150/ijms.49449"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33390777"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33390777"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xu Yang, Guixia Wu, Fan Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elevated LINC00909 Promotes Tumor Progression of Ovarian Cancer via Regulating the miR-23b-3p/MRC2 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oxid Med Cell Longev (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2021/5574130"}], "href": "https://doi.org/10.1155/2021/5574130"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34336102"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34336102"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Zhentao Liu, Chengyin Lu, Hongkang Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00909 promotes tumor progression in human glioma through regulation of miR-194/MUC1-C axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2019.108965"}], "href": "https://doi.org/10.1016/j.biopha.2019.108965"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31132669"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31132669"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Lei Ma, Yan-Yan Wang, Peng Jiang "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00909 promotes cell proliferation and metastasis in pediatric acute myeloid leukemia via miR-625-mediated modulation of Wnt/β-catenin signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2020.05.001"}], "href": "https://doi.org/10.1016/j.bbrc.2020.05.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32423818"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32423818"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xiao-Ying Lin, Ka-Yuk Yuen, Hai-Lei Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive Analysis of Potential Biomarkers of Acute Lymphoblastic Leukemia in Children by Using a Competing Endogenous RNA Network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Oncol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2022/4563523"}], "href": "https://doi.org/10.1155/2022/4563523"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35432537"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35432537"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yiyi Zhang, Bingjie Guan, Yong Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNAs Associated with Chemoradiotherapy Response and Prognosis in Locally Advanced Rectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Inflamm Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/JIR.S334096"}], "href": "https://doi.org/10.2147/JIR.S334096"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34866926"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34866926"}]}]}]}
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| NCBI Gene ID | 400657 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00909 has 846 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.
Click the + buttons to view associations for LINC00909 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00909 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00909 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00909 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00909 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00909 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00909 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00909 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00909 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00909 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00909 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00909 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00909 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00909 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00909 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00909 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |