| Name | long intergenic non-protein coding RNA 917 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00917 appears to be a multifunctional long non‐coding RNA implicated in diverse pathological processes. In Alzheimer’s disease research, its locus was identified as nearly genome‐wide significantly associated with cerebrospinal fluid clusterin levels, pointing to a potential role in modulating immune responses and the wound healing process following neurodegeneration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a study of breast cancer mortality, a single nucleotide polymorphism positioned between LINC00917 and FOXF1 was associated with patient survival, suggesting that genetic variation near LINC00917 may influence cancer outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the context of intervertebral disc degeneration, LINC00917 was found to be differentially expressed and co‐clustered with other transcripts in lncRNA–mRNA regulatory networks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Functional experimentation further revealed that under oxidative stress conditions, increased LINC00917 expression in nucleus pulposus cells contributes to cytotoxicity, inflammation, and pyroptosis by acting as a competing endogenous RNA that sequesters miR‑149‑5p, thereby modulating NLRP1 expression and promoting degenerative processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, integrative bioinformatics analyses in colorectal cancer have identified LINC00917 as part of core non‐coding RNA networks associated with tumor progression, underscoring its potential utility as a molecular biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Collectively, these studies indicate that LINC00917 may function in regulating immune activity, inflammatory responses, and cell fate decisions across several diseases.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuetiva Deming, Jian Xia, Yefei Cai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurobiol Aging (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neurobiolaging.2015.09.009"}], "href": "https://doi.org/10.1016/j.neurobiolaging.2015.09.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26545630"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26545630"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sajjad Rafiq, Sofia Khan, William Tapper, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A genome wide meta-analysis study for identification of common variation associated with breast cancer prognosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0101488"}], "href": "https://doi.org/10.1371/journal.pone.0101488"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25526632"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25526632"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yu Chen, Haijian Ni, Yingchuan Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/msm.894638"}], "href": "https://doi.org/10.12659/msm.894638"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26556537"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26556537"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tengfei Li, Ye Peng, Yufei Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intergenic non-coding RNA -00917 regulates the proliferation, inflammation, and pyroptosis of nucleus pulposus cells via targeting miR-149-5p/NOD-like receptor protein 1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2043100"}], "href": "https://doi.org/10.1080/21655979.2022.2043100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35184666"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35184666"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Fahimeh Fattahi, Jafar Kiani, Mohsen Khosravi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Enrichment of Up-regulated and Down-regulated Gene Clusters Using Gene Ontology, miRNAs and lncRNAs in Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Comb Chem High Throughput Screen (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1386207321666191010114149"}], "href": "https://doi.org/10.2174/1386207321666191010114149"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31654507"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31654507"}]}]}]}
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| NCBI Gene ID | 732275 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00917 has 268 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.
Click the + buttons to view associations for LINC00917 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00917 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00917 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00917 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00917 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00917 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00917 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with LINC00917 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00917 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00917 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00917 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |