LINC00923 Gene

Name long intergenic non-protein coding RNA 923
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although none of the abstracts provide a detailed mechanistic role for LINC00923, one study focused on head and neck squamous cell carcinoma (HNSCC) identified LINC00923 as a candidate long non‐coding RNA whose expression was significantly associated with patient survival. In that study, RNA‑sequencing analysis of HNSCC tissue samples revealed that among several lncRNAs showing differential expression, LINC00923 was one of five (along with KTN1‑AS1, LINC00460, GUSBP11, and RP5‑894A10.6) initially selected as potential prognostic biomarkers. However, when the authors refined their prognostic model, a panel comprising KTN1‑AS1, LINC00460, and RP5‑894A10.6 provided the highest predictive accuracy for overall survival, which suggests that while LINC00923 may be involved in the molecular landscape of HNSCC, its prognostic impact was less robust compared to the other candidates."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n The remaining abstracts addressed chronic inflammatory states and chronic kidney disease (CKD) progression but did not elaborate on the specific biological function or clinical relevance of LINC00923. As such, while LINC00923 appears as a molecule of interest in the context of cancer prognosis, particularly HNSCC, additional research is needed to clarify its precise function and potential as a biomarker in other diseases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wei Cao, Jian-Nan Liu, Zeqi Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A three-lncRNA signature derived from the Atlas of ncRNA in cancer (TANRIC) database predicts the survival of patients with head and neck squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oral Oncol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.oraloncology.2016.12.017"}], "href": "https://doi.org/10.1016/j.oraloncology.2016.12.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28109476"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28109476"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mehmet Kanbay, Aslihan Yerlikaya, Alan A Sag, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A journey from microenvironment to macroenvironment: the role of metaflammation and epigenetic changes in cardiorenal disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Kidney J (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/ckj/sfz106"}], "href": "https://doi.org/10.1093/ckj/sfz106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31807301"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31807301"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Afshin Parsa, Peter A Kanetsky, Rui Xiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-Wide Association of CKD Progression: The Chronic Renal Insufficiency Cohort Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Soc Nephrol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1681/ASN.2015101152"}], "href": "https://doi.org/10.1681/ASN.2015101152"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27729571"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27729571"}]}]}]}
NCBI Gene ID 91948
API
Download Associations
Predicted Functions View LINC00923's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00923's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00923's ARCHS4 Predicted Functions.

Functional Associations

LINC00923 has 410 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for LINC00923 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00923 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00923 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00923 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00923 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00923 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00923 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00923 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00923 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00923 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of LINC00923 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of LINC00923 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00923 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00923 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00923 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00923 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.